workflow
A bioinformatics pipeline to phase and impute genetic data
mtDNA-Server 2: A web-service and Nextflow pipeline for mitochondrial genomes
Reproducible Snakemake workflow for benchmarking single-cell chromatin accessibility analysis methods, published in https://doi.org/10.1186/s13059-024-03356-x
Python applications and libraries for working with PGS data and the PGS Catalog
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.
A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region expansions (RREs) from short DNA reads
Nextflow wrapper for the tobias analysis tool
A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
Low-code programming for event-driven applications
A Rust-based, headless workflow execution framework supporting local, cloud, and HPC.
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Imputation Server 2 workflow to facilitate genotype imputation at scale.
A bioinformatics best-practice analysis pipeline for the analysis of shallow whole genome sequencing (sWGS) data for the identification of copy number alterations (CNAs).
Create beautiful, publication-quality books and documents from computational content.
Flexible linear mixed model framework for Genome Wide Association Studies
Implementation of CoCoRV pipeline using Nextflow and Singularity
Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease
A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.
Config and setup to run nf-core/raredisease pipeline