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nf-prov Public
Forked from nextflow-io/nf-provNextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.
Groovy Apache License 2.0 UpdatedDec 15, 2025 -
favorites Public
This is a page about my favorite books,foods,songs movies, etc...
UpdatedDec 15, 2025 -
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gazoduc-nf Public
Nextflow Pipelines
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jvarkit Public
Java utilities for Bioinformatics
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xslt-sandbox Public
My xslt sandbox
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bcfparser Public
java parser for BCF2.2 format (Binary VCF format). The current HTSJDK only supports BCF2.1
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bcftools Public
Forked from samtools/bcftoolsThis is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
C Other UpdatedAug 5, 2025 -
htslib Public
Forked from samtools/htslibC library for high-throughput sequencing data formats
C Other UpdatedAug 5, 2025 -
bedtools2 Public
Forked from arq5x/bedtools2A powerful toolset for genome arithmetic.
C++ MIT License UpdatedJul 31, 2025 -
broadgatk Public
Forked from broadinstitute/gatkOfficial code repository for GATK versions 4 and up
Java Other UpdatedJul 30, 2025 -
nextflow Public
Forked from nextflow-io/nextflowA DSL for data-driven computational pipelines
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sarek Public
Forked from nf-core/sarekAnalysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Nextflow MIT License UpdatedJun 15, 2025 -
htsjdk Public
Forked from samtools/htsjdkA Java API for high-throughput sequencing data (HTS) formats.
Java UpdatedApr 30, 2025 -
grid4drawing Public
Drawing Grid for artists
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Burrow-Wheeler Aligner
C GNU General Public License v3.0 UpdatedMar 25, 2025 -
makefile2graph Public
Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.
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MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
JavaScript GNU General Public License v3.0 UpdatedDec 13, 2024 -
htsplusplus Public
Select variants from VCF/BCF spaced by a distance 'd'.
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kilda Public
Forked from MCorentin/kildaKILDA (KIv2 Length Determined from a kmer Analysis) provides an alignment-free estimation of the number of KIV2 (Kringle IV type 2) repeats from FASTQ files.
Python GNU Affero General Public License v3.0 UpdatedOct 30, 2024 -
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nfcore-modules Public
Forked from nf-core/modulesRepository to host tool-specific module files for the Nextflow DSL2 community!
Nextflow MIT License UpdatedSep 23, 2024 -
nfcore-test-datasets Public
Forked from nf-core/test-datasetsTest data to be used for automated testing with the nf-core pipelines
MIT License UpdatedSep 11, 2024 -
MultiQC_TestData Public
Forked from MultiQC/test-dataTest data for MultiQC. See https://github.com/ewels/MultiQC
HTML MIT License UpdatedSep 4, 2024 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell MIT License UpdatedSep 3, 2024 -
multi-package-containers Public
Forked from BioContainers/multi-package-containersTesting building mulled containers for multi-requirement tools.
UpdatedAug 27, 2024 -
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microstatements Public
cutsom RDF statements for bioinformatics to complete larger RDF databases like MONDO
Apache License 2.0 UpdatedMay 20, 2024
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