An ultra-fast and efficient genomic tool for coverage calculation

👷 Fasten toolkit, for streaming operations on fastq files

REINDEER REad Index for abuNDancE quERy

A Rust library and command line tool for working with genomic ranges and their data.

Calculate distances between phylogenetic trees in R

Interactive tool for visualizing site-level data on a protein structure

De novo estimates of genetic relatedness from next-gen sequencing data

Catalogue of pairwise alignment algorithms and benchmarks

python tools for TCR:peptide-MHC modeling and analysis

Multiple sequence alignment visualizer

Aggregate HLA allele frequencies data from allelefrequencies.net at large multi population scale

T1K is a versatile methods to genotype highly polymorphic genes (e.g. KIR, HLA) with bulk or single-cell RNA-seq, WGS or WES data.

A bioinformatics best-practice analysis pipeline for epitope prediction and annotation

FRASER - Find RAre Splicing Events in RNA-seq

a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

Convert bioinformatics file formats to Zarr

Quickly search, compare, and analyze genomic and metagenomic data sets.

Single cell analysis in the browser

A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

AnnData interoperability in R

Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.

CGAT-ruffus is a lightweight python module for running computational pipelines

collections of tools for cytometry data analysis

R package to manage multicollinearity in modeling data frames.

Repository for Advanced Data Science Book

Biological sequence analysis for the modern age.

Open source implementation of AlphaFold3

BWT construction and search

Tool for exploring sequence alignment algorithms