Antibody Numbering and Antigen Receptor ClassIfication

AbLang: A language model for antibodies

Archives. Future development continues at SR-Wiki/SN2N.

Cell-type Relationship Analysis Workflow Done Across Distances

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

Fast interval intersection library

Genome browser and variant annotation

Development of the HLAtools R package

What should perfect bioinformatic tools be like?

Python interface to amino acid properties and IEDB

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

Python language bindings for bwa

An R package designed for drawing gene arrow maps

Visualizing transcript structure and annotation using ggplot2

ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167

CellDepot: A unified repository for scRNA-seq data and visual exploration. J Mol Biol. 2021 Dec 28:167425. doi: 10.1016/j.jmb.2021.167425.

Code for the identification step for CSI-Microbes

Compile openslide using emscripten

Client-side gene set queries.

Convert TCR gene names

An efficient CLI to extract sequences from the SRA

macromolecular crystallography library and utilities

Geometry-preserving random sampling

BamQuery provides RNA-seq quantification for a given peptide (from 8 to 11 residues) in chosen RNA-seq samples (single or bulk).

Instantaneous Metagenome Taxonomic Profiling with MetaKSSD

Flexible HDF5 saving/loading and other data science tools from the University of Chicago

Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

Oxbow makes genomic data ready for high-performance analytics.

A high-performance BigWig and BigBed library in Rust