-
Mass General Brigham
- https://slowkow.com
- https://orcid.org/0000-0002-2843-6370
- @slowkow.com
- in/kslowikowski
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Lists (21)
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Bioinformatics
Command Line Tools
Utilities to make life easier on the command line.Computational Biology
Data and Code for Publications
Data Visualization
Database Tools
Deep Learning
HLA
Learning Statistics
Mac apps
Matrix Factorization
nim-lang
PDF Tools
Tools for dealing with the PDF file format.Python package development
R package development
Regression
Rust
Single-cell Genomics Analysis
Tools for Academic Research
Tools designed to advance academic research.Web App Development
Libraries, packages, tools, and resources for building web applications.WebAssembly
Web apps powered by WebAssembly- All languages
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Starred repositories
an interactive explorer for flow cytometry data
A direct manipulation programming environment for interactive cartography on the web.
📚 Biomedical knowledge mining using GOSemSim and clusterProfiler
Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data
R package to insert elements (e.g. ggplot2 figures, text, images) into svg files
A python graphing library for plotting multiple sequence alignments. An app build on top that runs everything in your browser.
Arc Virtual Cell Atlas
A high efficiency binary format for sequencing data
A DSL for layered grammar of interactive graphics in R
CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq
Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models
DiseaseNeuroGenomics / crumblr
Forked from GabrielHoffman/crumblrCount ratio uncertainty modeling base linear regression
Interactive Article Explaining Isomap
Headless cloud-native authentication and identity management written in Go. Scales to a billion+ users. Replace Homegrown, Auth0, Okta, Firebase with better UX and DX. Passkeys, Social Sign In, OID…
htmlwidget that creates plotly parallel categories diagrams from easyalluvial plots.
Tools for Unmixing Spectral Flow Cytometry Data
Machine learning and single-cell transcriptomic analysis framework for characterizing platelet subpopulations in COVID-19, Sepsis, and SLE, revealing novel prognostic biomarkers and therapeutic tar…
A fully featured React components library
De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model
PocketMaster is a flexible and automated tool for analyzing, clustering, and visualizing protein binding sites. It allows you to quickly compare structures, explore functional regions of proteins, …
Compute generation probabilities of CDR3 amino acid and nucleotide sequences
😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎
Explore the Julia and Mandelbrot Fractals