Lists (22)
Bioinformatics
180 repositories
Command Line Tools
Utilities to make life easier on the command line.43 repositories
Computational Biology
49 repositories
Data and Code for Publications
2 repositories
Data Visualization
64 repositories
Database Tools
4 repositories
Deep Learning
2 repositories
HLA
8 repositories
Learning Statistics
17 repositories
Mac apps
7 repositories
Matrix Factorization
6 repositories
nim-lang
3 repositories
PDF Tools
Tools for dealing with the PDF file format.1 repository
Python package development
19 repositories
R package development
35 repositories
Regression
9 repositories
Rust
13 repositories
Single-cell Genomics Analysis
61 repositories
Spatial Transcriptomics
2 repositories
Tools for Academic Research
Tools designed to advance academic research.39 repositories
Web App Development
Libraries, packages, tools, and resources for building web applications.204 repositories
WebAssembly
Web apps powered by WebAssembly1 repository
Starred repositories
Fast genomics quality control tools for sequencing data, written in Rust.
Fast and accurate gene fusion detection from RNA-Seq data
We're back! Now firing notebooks out of a t-shirt gun.
Tumor Specific Antigen discovery: personalized cancer immunotherapy targets from curated shared antigen data
code to run EPInformer for gene expression prediction and gene-enhancer link prediction
DiRe accelerated by PyTorch, PyKeOps and cuVS
Integrative framework combining TF footprinting with genome-wide association analyses to identify causal noncoding variants and elucidate their regulatory mechanisms in gene regulation
Transformer Based Embeddings of Wasserstein Distance
Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing
Identify which human reference genome was used to align a BAM/SAM/CRAM file
DSPy: The framework for programming—not prompting—language models
Investigative data journalism: quantifying fixable waste in US healthcare, one issue at a time. Open-source analysis of CMS, OECD, and federal datasets. $98.6B in savings identified so far.
Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.
JavaScript in-page GUI agent. Control web interfaces with natural language.
Sparse Lazy Array Format (SLAF) for Single-Cell Genomics
Copy number variant detection from targeted DNA sequencing
Zero dependency docking layout manager supporting tabs, groups, grids and splitviews. Supports React, Vue, Angular, and vanilla TypeScript.
Browser automation CLI for AI agents
RamaLama is an open-source developer tool that simplifies the local serving of AI models from any source and facilitates their use for inference in production, all through the familiar language of …
A set of libraries to enable AI apps/agents to control frontend web apps by exposing state and actions as tools using MCP
Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics