Fast and accurate gene fusion detection from RNA-Seq data

We're back! Now firing notebooks out of a t-shirt gun.

Tumor Specific Antigen discovery: personalized cancer immunotherapy targets from curated shared antigen data

code to run EPInformer for gene expression prediction and gene-enhancer link prediction

DiRe accelerated by PyTorch, PyKeOps and cuVS

Integrative framework combining TF footprinting with genome-wide association analyses to identify causal noncoding variants and elucidate their regulatory mechanisms in gene regulation

Transformer Based Embeddings of Wasserstein Distance

Simultaneous exploration of thousands of long-read transcriptomes by read-level indexing

Identify which human reference genome was used to align a BAM/SAM/CRAM file

DSPy: The framework for programming—not prompting—language models

Investigative data journalism: quantifying fixable waste in US healthcare, one issue at a time. Open-source analysis of CMS, OECD, and federal datasets. $98.6B in savings identified so far.

Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.

JavaScript in-page GUI agent. Control web interfaces with natural language.

A scientific plotting library in Rust

Sparse Lazy Array Format (SLAF) for Single-Cell Genomics

Copy number variant detection from targeted DNA sequencing

Zero dependency docking layout manager supporting tabs, groups, grids and splitviews. Supports React, Vue, Angular, and vanilla TypeScript.

rna2seg

Browser automation CLI for AI agents

Publication-quality molecular graphics.

RamaLama is an open-source developer tool that simplifies the local serving of AI models from any source and facilitates their use for inference in production, all through the familiar language of …

A set of libraries to enable AI apps/agents to control frontend web apps by exposing state and actions as tools using MCP

Reconstructing single-cell lineage history using mitochondrial mutation drift dynamics

A lightweight, lightning-fast, in-process vector database