Perform differential expression analysis on cohort-scale single cell datasets using linear mixed models

Count ratio uncertainty modeling base linear regression

ggplot2 extension to draw springs

Aggregate HLA allele frequencies data from allelefrequencies.net at large multi population scale

Cross-filter millions (or even billions) of data entries with no interaction delay

Force-directed graph layout using true velocity Verlet integration for use in molecular dynamics.

A quantitative framework for evaluating data structure preservation by dimensionality reduction techniques

Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis

Scalable analysis of large high-dimensional data

GPU-Parallelized UMAP

Truly parallel gzip decompression

A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets

Gene Set Enrichment Analysis in Python

An OO R-Tree Library for Javascript/Typescript

Linear mixed model for genomic analyses.

Utilities for running R on a remote server

Google Drive client for the commandline

The x86 processor fuzzer

Analysis of single cell RNA-seq data course

Modular blocks to build Snakemake workflows for reproducible NGS analyses

An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data

Research & Teaching Statements in Evolution/Ecology

Fork of Pandoc for the implementation of a ScholarlyMarkdown parser

Cython implementation of Toolz: High performance functional utilities

Fork and custom implementation of LineUp Library for Visual Analysis of Multi-Attribute

Standards compliant, fast, secure markdown processing library in C

Tools for bioinformatics

A Variant Call Format reader for Python.

R package development - the Leek group way!