Bioinformatics
NCBI Datasets is a new resource that lets you easily gather data from across NCBI databases.
Collection of bioinformatics training materials
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
Fast and accurate in silico inference of HLA genotypes from RNA-seq
Bioinformatics tool outputs converter to JSON or YAML
Interactively analyze single cell genomic data
Command line tool for submitting WDL jobs to Terra or Cromwell server.
A simple gene co-expression analyses workflow powered by tidyverse and graph analyses
Transcript assembly and quantification for RNA-Seq
A high-performance, zero-overhead, extensible Python compiler with built-in NumPy support
A tool for detecting somatic variants in single cell data
🎯 ChIP peak Annotation, Comparison and Visualization
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
Differential expression analysis for single-cell RNA-seq data.
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
Efficient genotyping bi-allelic SNPs on single cells
Demultiplexing pooled scRNA-seq data with or without genotype reference
A C++ drop-in replacement of FastQC to assess the quality of sequence read data
An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-based FDP estimation.
Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more
Single-cell multi-omics integration using Optimal Transport