cloc counts blank lines, comment lines, and physical lines of source code in many programming languages.

Good-lookin' diffs. Actually… nah… The best-lookin' diffs. 🎉

Hosting git repositories -- Gitolite allows you to setup git hosting on a central server, with very fine-grained access control and many (many!) more powerful features.

a tool for backing up your data using rsync (if you want to get help, use https://lists.sourceforge.net/lists/listinfo/rsnapshot-discuss)

An open-source digital image forensic toolset

✨ Mojolicious - Perl real-time web framework

Main repository for munin master / node / plugins

ggplot2: elegant graphics for data analysis

it's like Rainmeter, but for CLI!

Trinity RNA-Seq de novo transcriptome assembly

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

A script to measure and limit CPU time and memory consumption of black-box processes in Linux

Core BioPerl 1.x code

STAR-Fusion codebase

VarDict

Perl driver for the MongoDB

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

Language agnostic RESTful data access to Ensembl data over HTTP

DTK (data toolkit) is a suite of tools for parsing, analyzing, and graphing logs and other datasets.

The Web in an **Awesome** Box

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf

LIghtweight blog engine on Mojo steroids!

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

A simple file based "CMS" on Mojo steroids!

RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link belo…

Copy from your terminal into your local clipboard.

BioPerl wrappers