cloc counts blank lines, comment lines, and physical lines of source code in many programming languages.

Make your diffs human readable for improved code quality and faster defect detection. 🎉

Hosting git repositories -- Gitolite allows you to setup git hosting on a central server, with very fine-grained access control and many (many!) more powerful features.

a tool for backing up your data using rsync (if you want to get help, use https://lists.sourceforge.net/lists/listinfo/rsnapshot-discuss)

An open-source digital image forensic toolset

✨ Mojolicious - Perl real-time web framework

Main repository for munin master / node / plugins

ggplot2: elegant graphics for data analysis

it's like Rainmeter, but for CLI!

Trinity RNA-Seq de novo transcriptome assembly

Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data

A script to measure and limit CPU time and memory consumption of black-box processes in Linux

Core BioPerl 1.x code

STAR-Fusion codebase

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

VarDict

Perl driver for the MongoDB

Language agnostic RESTful data access to Ensembl data over HTTP

DTK (data toolkit) is a suite of tools for parsing, analyzing, and graphing logs and other datasets.

convert your 23andme raw file to VCF | DEPRECATED, please see https://github.com/plantimals/2vcf

A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.

The Web in an **Awesome** Box

LIghtweight blog engine on Mojo steroids!

Scripts and tutorials on how to assemble individual microbial genomes from metagenomes

A simple file based "CMS" on Mojo steroids!

RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference transposable elements. Please read the wiki page (link belo…

Copy from your terminal into your local clipboard.

BioPerl wrappers