Lists (22)
Bioinformatics
181 repositories
Command Line Tools
Utilities to make life easier on the command line.43 repositories
Computational Biology
49 repositories
Data and Code for Publications
2 repositories
Data Visualization
64 repositories
Database Tools
4 repositories
Deep Learning
2 repositories
HLA
8 repositories
Learning Statistics
17 repositories
Mac apps
7 repositories
Matrix Factorization
6 repositories
nim-lang
3 repositories
PDF Tools
Tools for dealing with the PDF file format.1 repository
Python package development
19 repositories
R package development
35 repositories
Regression
9 repositories
Rust
13 repositories
Single-cell Genomics Analysis
61 repositories
Spatial Transcriptomics
2 repositories
Tools for Academic Research
Tools designed to advance academic research.39 repositories
Web App Development
Libraries, packages, tools, and resources for building web applications.204 repositories
WebAssembly
Web apps powered by WebAssembly1 repository
Starred repositories
49
stars
written in Java
Clear filter
Apache Druid: a high performance real-time analytics database.
OpenRefine is a free, open source power tool for working with messy data and improving it
Algorithms, 4th edition textbook code and libraries
Statistical Machine Intelligence & Learning Engine
RStudio is an integrated development environment (IDE) for R
A machine learning software for extracting information from scholarly documents
Zotero plugin to manage your attachments: automatically rename, move, and attach PDFs (or other files) to Zotero items, sync PDFs from your Zotero library to your (mobile) PDF reader (e.g. an iPad,…
Graphical Java application for managing BibTeX and BibLaTeX (.bib) databases
Please visit https://github.com/h2oai/h2o-3 for latest H2O
A Graph Traversal Language (no longer active - see Apache TinkerPop)
Official code repository for GATK versions 4 and up
jeresig / processing-js
Forked from processing-js/processing-jsA port of the Processing visualization language to JavaScript.
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
ShinyProxy - Open Source Enterprise Deployment for Shiny and data science apps
Prefuse is a set of software tools for creating rich interactive data visualizations in the Java programming language. Prefuse supports a rich set of features for data modeling, visualization, and …
A new accessible interface for your smartphone, suitable for seniors
A powerful open source data warehouse system
Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool
New Genome Browser (NGB) - a Web - based NGS data viewer with unique Structural Variations (SVs) visualization capabilities, high performance, scalability, and cloud data support