A versatile pairwise aligner for genomic and spliced nucleotide sequences

Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.

GenomeTools genome analysis system.

A program to quickly count files in a subdirectory. This is mostly a programming demonstration.

An efficient FASTQ manipulation suite

PAired-eND Assembler for DNA sequences

a wee tool for random access into BGZF files.

Algorithm to divide a phylogenetic tree into segments based on phenotypes at the leaves of the tree

Fast but inaccurate adapter trimmer for Illumina reads