Issues

• get_db("organisms") and oma_organisms() fail

  saezlab/OmnipathR#128 · Filter by author hberger opened on Jun 23, 2026
  4

• Stale cached collectri data fails collectri() with cryptic error message

  saezlab/OmnipathR#127 · Filter by author ppm1337 opened on Apr 16, 2026
  1

• Retrieving interactions error: index out of bounds in modifyList(defaults, .)

  saezlab/OmnipathR#126 · Filter by author Rachmanichou opened on Feb 23, 2026

• Bioconductor failure and risk of deprecation

  saezlab/OmnipathR#125 · Filter by author lshep opened on Jan 6, 2026
  1

• Incompatibility with httr2 1.2.2?

  saezlab/OmnipathR#124 · Filter by author bbimber opened on Dec 28, 2025
  2

  

• Generating goslim fails due to curl error

  saezlab/OmnipathR#123 · Filter by author wudustan opened on Aug 14, 2025

• curated_ligand_receptor_interactions() failing

  saezlab/OmnipathR#122 · Filter by author annajbott opened on Aug 1, 2025

• map_int() error

  saezlab/OmnipathR#121 · Filter by author gabrigammal opened on Aug 1, 2025
  2

• failed to download

  saezlab/OmnipathR#117 · Filter by author Admitabc opened on Jan 10, 2025
  1

  

• Changing directory path for omnipathR Installation

  question
  saezlab/OmnipathR#115 · Filter by author min0609 opened on Dec 20, 2024
  1

  

• kegg_pathway_annotations fails with uninformative error

  saezlab/OmnipathR#113 · Filter by author danhalligan-la opened on Nov 3, 2024

• Parallelization error when optimizing parameters for NicheNet

  saezlab/OmnipathR#105 · Filter by author tkapello opened on Aug 1, 2024

• kegg_pathways_download returns fewer pathways

  question
  saezlab/OmnipathR#102 · Filter by author cchen22 opened on Jun 27, 2024
  1

  

• wrong TGFB1-SMAD7 interaction

  saezlab/OmnipathR#98 · Filter by author adugourd opened on Feb 22, 2024

• Error when Testing the pipeline

  saezlab/OmnipathR#89 · Filter by author Mirable8me opened on Oct 19, 2023
  3

• TIME OUT for import_intercell_network

  saezlab/OmnipathR#88 · Filter by author howtofindme opened on Oct 9, 2023
  6

  

• Clarification about commercial licenses

  enhancement
  saezlab/OmnipathR#87 · Filter by author InesdeSantiago opened on Sep 30, 2023
  3

  

• error when run import_omnipath_annotations

  saezlab/OmnipathR#86 · Filter by author FADHLyemen opened on Sep 23, 2023
  1

  

• CDK6 -> RUNX1 interaction should be consensus inhibition

  saezlab/OmnipathR#83 · Filter by author adugourd opened on Sep 4, 2023

• PDPK1 and PDK1 are mixed up

  saezlab/OmnipathR#81 · Filter by author adugourd opened on Aug 25, 2023

• How to get information about downstream target genes of ligands and receptors in cell interactions?

  question
  saezlab/OmnipathR#77 · Filter by author juntianqi opened on Jul 14, 2023
  2

• Vinayagam et al. suppl: download fails from sciencemag due to lack of cookie

  bug
  saezlab/OmnipathR#76 · Filter by author j-bac opened on Jul 10, 2023