sc-eQTLgen-consortium

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1. WG1-pipeline-QC WG1-pipeline-QC Public

   Part of the sc-eQTLgen consortium pipeline. Step 1, where the QC is done.

   Python 8 6

2. li-2023 li-2023 Public

   Building Gene Regulatory Networks in scRNA-seq data, https://doi.org/10.1186/s13059-023-02897-x

   Jupyter Notebook 7 1

3. WG2-pipeline-classification WG2-pipeline-classification Public

   Part of the sc-eQTLgen consortium pipeline. Step 2, where the cell-type classification is done.

   R 6 1

4. co-expressionQTLs co-expressionQTLs Public

   Forked from shuang1330/single_cell

   Building Gene Regulatory Networks in scRNA-seq data, replaced by https://github.com/sc-eQTLgen-consortium/li-2023

   Jupyter Notebook 4

5. WG3-pipeline-QTL WG3-pipeline-QTL Public

   Part of the sc-eQTLgen consortium pipeline. Step 3, where the QTL mapping is done.

   R 3 3

6. sc_wma sc_wma Public

   Repository for Weighted Meta Analysis paper by Maryna Korshevniuk

   R 3