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  • University of York
  • York, UK

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5 stars written in Perl
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BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes

Perl 430 90 Updated Oct 20, 2025

Filter SAM file for soft and hard clipped alignments

Perl 52 10 Updated Jun 1, 2024
Perl 40 17 Updated Feb 14, 2021
Perl 16 2 Updated Jun 18, 2020

Metabolic scanning and annotation of Metagenomes

Perl 10 1 Updated Mar 17, 2025