Convert RepeatMasker ".out" file into a gff3 with colors!!!

BUSCO_Phylogenomics | Pipeline to construct species phylogenies using BUSCO proteins

High-precision TE Annotator

Identification of transposable element families from pangenome polymorphisms

A pipeline for predicting and masking transposable elements in multiple genomes.

PanTE: A Comprehensive Framework for Transposable Element Discovery in Graph-based Pangenomes

GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.

Nextflow script for running RepeatMasker on a cluster

Dfam Transposable Element Tools Docker container.