AI agents running research on single-GPU nanochat training automatically

Explore genomes in the terminal. Light, blazing fast 🚀, vim-motion.

A repo collecting my generative AI projects

Lightweight coding agent that runs in your terminal

Program for aligning DNA sequences, a pairwise aligner.

Genome modeling and design across all domains of life

(Class) Student assignment project (Bioinformatics)

Constructing the genernalized suffix array of a string set

Automatically exported from code.google.com/p/figtree

HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data

🗣️ ⌨️ Speech-to-text on key for Linux

Lightweight mosaic/somatic SV caller for long reads (WIP)

This repo is for backup only. Please check the parent repo for details.

This repo is for backup only. Please check the parent repo for details.

Machine learning from scratch

The personal finance app for everyone

A simple neural network for calling het-/hom-variants from alignments of single molecule reads to a reference

Simple phylogenetic tree visualization python package for phylogenetic analysis

python Circos

Cross-platform software to draw phylogenetic trees

Fast hash function for DNA/RNA sequences

a toolset for fast DNA read set matching and assembly using a new type of reduced kmer

A organelle de novo genome assembly toolkit

Crawl a site to generate knowledge files to create your own custom GPT from a URL

Base R/python/etc. internal OpenStack cloud setup for Teichlab

Module for embedding igv.js in an IPython notebook

An innovative superfamily of fonts for code

NOVOPlasty - The organelle assembler and heteroplasmy caller

Plotly for Rust