Oxford Nanopore's Basecaller

Signal-level algorithms for MinION data

Raw nanopore signal mapper that enables real-time targeted sequencing

Code examples of fast and simple k-mer counters for tutorial purposes

Fast, scalable, accessible photonic simulation

MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads

An open multiple patterning framework

GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging

A Design Rule Checker with GPU Acceleration

Adapter trimmer for Oxford Nanopore reads using ab initio method

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

Fast and scalable nanopore adaptive sampling

Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.

A streaming method for mapping nanopore raw signals

DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration

CHAP is a tool for the functional annotation of ion channel structures:

Workflow for Nanopore Sequencing of 10x single cell libraries

Codec for DNA data storage able to correct substitutions, deletions, insertions and fragment loss with constraint adherence.

Error correction scheme for storing information on DNA

High-fidelity 5mCG DNA methylation detection model for Nanopore sequencing reads

Collect raw signal event samples for k-mers from an event alignment file

Signal-level algorithms for MinION data

Single-molecule Workflow for Analysing RNA Modifications

RawAlign is a real-time raw nanopore read mapper based on the Seed-Filter-Align paradigm as described by Lindegger et al. (https://arxiv.org/abs/2310.05037)

[RECOMB-seq '25] Code repository for the paper "Efficient Trace Reconstruction for DNA Data Storage Systems using Bidirectional Beam Search"

A easy-to-use CpG modification caller for Oxford Nanopore Sequencing Data

A single-molecule manipulation instruments that utilize a magnetic field to apply force to a biomolecule-tethered magnetic bead.

Embed fast5 signal files with a correctly formatted kmer to event alignment given the nucleotide sequence and a model file

Fast signal-level matching for direct RNA nanopore sequencing