Stars
Raw nanopore signal mapper that enables real-time targeted sequencing
Code examples of fast and simple k-mer counters for tutorial purposes
Fast, scalable, accessible photonic simulation
MECAT: an ultra-fast mapping, error correction and de novo assembly tool for single-molecule sequencing reads
GPU-accelerated Dynamic Time Warp (DTW) Barycenter Averaging
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
Fast and scalable nanopore adaptive sampling
Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
DNA storage for nanopore sequencing using convolutional coding and basecaller-decoder integration
CHAP is a tool for the functional annotation of ion channel structures:
Workflow for Nanopore Sequencing of 10x single cell libraries
Codec for DNA data storage able to correct substitutions, deletions, insertions and fragment loss with constraint adherence.
Error correction scheme for storing information on DNA
High-fidelity 5mCG DNA methylation detection model for Nanopore sequencing reads
Collect raw signal event samples for k-mers from an event alignment file
Single-molecule Workflow for Analysing RNA Modifications
RawAlign is a real-time raw nanopore read mapper based on the Seed-Filter-Align paradigm as described by Lindegger et al. (https://arxiv.org/abs/2310.05037)
[RECOMB-seq '25] Code repository for the paper "Efficient Trace Reconstruction for DNA Data Storage Systems using Bidirectional Beam Search"
A easy-to-use CpG modification caller for Oxford Nanopore Sequencing Data
A single-molecule manipulation instruments that utilize a magnetic field to apply force to a biomolecule-tethered magnetic bead.
Embed fast5 signal files with a correctly formatted kmer to event alignment given the nucleotide sequence and a model file
Fast signal-level matching for direct RNA nanopore sequencing
A blazing fast basecaller to convert nanopore electric signal to DNA sequence
Double-Sided Greedy Median Algorithm for Fast and Accurate Trace Reconstruction in DNA Data Storage