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542 results for source starred repositories
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Python 1 1 Updated Apr 4, 2025

Detection of different source of damage through Nanopore sequencing

Python 1 Updated Feb 22, 2022
Python 8 Updated Oct 20, 2025

The Dinopore code with python version

Python 1 Updated Nov 23, 2023

single current blockade analyzer, good for finding secodary peaks.

Python 2 Updated Sep 23, 2025

Detection of Nm sites from Nanopore DRS data

R 2 Updated Mar 27, 2024

original hoffmann pipeline, with changes for portability

Perl 1 Updated Dec 16, 2022

Pipeline for NanoNASC-seq datasets.

Python 1 Updated Sep 13, 2025

CircRM, a nanopore sequencing–based computational method for profiling RNA modifications in circRNAs at single-base and single-molecule resolution. By integrating circRNA detection, read-level meth…

Python 1 Updated Sep 24, 2025

Workspace of the Development of Nanopore-based Single-Cell Full-Length Newly Synthesized RNA Sequencing Technology.

Jupyter Notebook 1 Updated Sep 11, 2025

Deep learning for RNA Modification

C 3 Updated Oct 1, 2025
Jupyter Notebook 1 Updated Jan 24, 2025
Python 2 2 Updated Mar 21, 2025
Jupyter Notebook 1 Updated Sep 14, 2025
Python 1 Updated Sep 23, 2021

This repository contains scripts for preprocessing Nanopore DNA sequencing data for training and validating BiGRU Recurrent Nerual Neatworks for detecting BrdU, Jupyter Notebooks for model training…

Shell 1 Updated Nov 3, 2025

Guess till correct: Gungnir codec enabling high error-tolerance and low-redundancy DNA storage through substantial computing power

Go 11 Updated Nov 5, 2025
Python 2 Updated Aug 26, 2025
Nextflow 14 Updated Nov 4, 2025

Single Molecule Imaging Toolbox Extraordinaire

MATLAB 19 5 Updated Nov 5, 2025
MATLAB 5 3 Updated Aug 8, 2023

LabVIEW code

Rich Text Format 1 2 Updated Apr 5, 2023

Drawings of accessories for RM21 microscope

1 Updated Jul 31, 2020
Python 6 Updated Jul 21, 2025
Python 1 Updated Oct 8, 2025

A Deep Ensemble Network for DNA Methylation Detection

Python 1 Updated Jul 27, 2025

NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm

Python 28 2 Updated May 9, 2024

Stand-alone tool for methylation-based discrimination of mitochondrial DNA ONT reads

Python 8 Updated Sep 22, 2025

A blazing fast basecaller to convert nanopore electric signal to DNA sequence

C++ 2 Updated Feb 28, 2025
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