Stars
Continuous Adjoint Optimization with Lumerical, developed at UC Berkeley
2D multi-source electromagnetic simulations in frequency domain, implementing the augmented partial factorization (APF) and other methods.
Graphical application for simulating Kerr frequency combs using both the Lugiato-Lefever equation and an Ikeda map.
Objective-first approach to nanophotonic design, implemented in Matlab
Matlab GUI based package for nanopore signal analysis
RETOP is an free Matlab toobox that implements a near-to-far-field transformation for computing the radiation diagram. This transformation is implemented in many electromagnetic software, however f…
Computes intensity and OPD images from QLSI interferograms (Quadriwave Lateral Shearing Interferometry)
Genetic-algorithm-based optimisation of resonator dispersion for tailoring Kerr comb states of the Lugiato-Lefever Equation (LLE).
MATLAB tools for Raith electron-beam lithography (EBL) and focused ion beam (FIB) systems — Outils MATLAB pour les systèmes Raith de lithographie par faisceau d'électrons et de faisceau d'ions foca…
MAN (Modal Analysis of Nanoresonators) is a matlab based software made for analyzing electromagnetic micro and nanoresonators.
Sofipackage is a Matlab-based software for super-resolution optical fluctuation imaging (SOFI) analysis.
Code associated with: AutoStepfinder: A fast and automated step detection method for single-molecule analysis Luuk Loeff, Jacob W J Kerssemakers et al, Patterns 2021 Apr 30;2(5):100256. doi: 10.101…
High-performance algorithm to measure microscopic force fields
Design and analysis scripts in python and matlab for denovo designed nanopores
2D simulation functions for slab and ridge waveguide mode study
Code and supporting files for "Increasing the accuracy of nanopore DNA sequencing using a time-varying cross membrane voltage". Larger support files, as well as all sequenced reads in the paper can…
Holographic Microscopy with Parabolic masking. Suite for 3D localisation of microscopic objects.
Hidden Markov models for biological time-series data, implemented from scratch in Matlab
This repository contains a solution to multiple constrained phase retrieval problem.