AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

🤗 Transformers: the model-definition framework for state-of-the-art machine learning models in text, vision, audio, and multimodal models, for both inference and training.

🤗 PEFT: State-of-the-art Parameter-Efficient Fine-Tuning.

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

🧬 gget enables efficient querying of genomic reference databases

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

Collected scripts for Pymol

Customizable workflows based on snakemake and python for the analysis of NGS data

tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

An RNA manipulation library.

Python client for the Egnyte Public API.

predict stability change upon mutation

Example project for integrating igv.js and flask

This package is a python library with tools for the Molecular Simulation - Software Gromos. It allows you to easily set up, manage and analyze simulations in python.

pymol scripts

A Python module for the PSL format from the BLAT alignment program

This repository describe the usage of neural networks to predict the affinity of peptides to MHC type I for humans. Neural networks was written in tensorflow and keras

epimeter is a tool that determines how similar a given neo-epitope is to the human proteome by calculating the distance between the peptide sequences. epimeter has two functions: "index" and "query…