Stars
Jan is an open source alternative to ChatGPT that runs 100% offline on your computer.
🔬A library of JavaScript components to represent biological data
Scientific Large Language Models: A Survey on Biological & Chemical Domains
🤗 PEFT: State-of-the-art Parameter-Efficient Fine-Tuning.
🤗 Transformers: the model-definition framework for state-of-the-art machine learning models in text, vision, audio, and multimodal models, for both inference and training.
GPT4All: Run Local LLMs on Any Device. Open-source and available for commercial use.
PyMOL able to be run via MyBinder.org
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
Small data files to test IARC nextflow pipelines
Example project for integrating igv.js and flask
A Python module for the PSL format from the BLAT alignment program
Code to generate results for 'Reciprocal F1 hybrids of two inbred mouse strains reveal parent-of-origin and perinatal diet effects on behavior and expression' (Oreper, Schoenrock, 2018)
tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies
This package is a python library with tools for the Molecular Simulation - Software Gromos. It allows you to easily set up, manage and analyze simulations in python.
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
An R/Bioconductor package that implements a single-sample molecular phenotyping approach
AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.
Documentation and description of AWS iGenomes S3 resource.
liftover version of the gatk resource bundle for the new assembling GRCH38 (primary assembling, no alt contigs or decoy sequences).
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair