Sverchok

Biomni: a general-purpose biomedical AI agent

Forecast / DarkSky's Skycons, Animated Weather icons recreated for Android

🇨🇭 A React renderer for Three.js

Running Pre-trained Machine Learning Models in Godot.

Adversarial Robustness Toolbox (ART) - Python Library for Machine Learning Security - Evasion, Poisoning, Extraction, Inference - Red and Blue Teams

NF-FRAGMENTOMICS PIPELINE

Learn the basics of robotics through hands-on experience using ROS 2 and Gazebo simulation.

Test data to be used for automated testing with the nf-core pipelines

Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution)

SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions

Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection

Utilities for handling Ethereum keys

🎤⌨️ Acoustic keyboard eavesdropping

Code and data used to create the JASPAR UCSC Genome Browser tracks data hub

A Shiny-based framework to analyze and visualize interactively genomic data

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

Metacell - Single-cell mRNA Analysis

Metacells - Single-cell RNA Sequencing Analysis

A shiny app for metacell analysis

A FASTQ read simulator

fastq2bcl convert fastq files in a bcl2fastq-able run directory.

FNA - Accuracy-focused XNA4 reimplementation for open platforms

Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.

a long read simulator that can imitate many types of read problems

SelectiOn in PRotein ANnotated regiOns. Adapted dN/dS based method to detect selection in specific protein regions

nextNEOpi: a comprehensive pipeline for computational neoantigen prediction