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t-digest extension

make installcheck

This PostgreSQL extension implements t-digest, a data structure for on-line accumulation of rank-based statistics such as quantiles and trimmed means. The algorithm is also very friendly to parallel programs.

The t-digest data structure was introduced by Ted Dunning in 2013, and a more detailed description and an example implementation are available in his GitHub repository [1]. In particular, see the paper [2] explaining the idea. Some of the code was inspired by tdigestc [3] and tdigest [4] by ajwerner.

The accuracy of estimates produced by t-digests can be orders of magnitude more accurate than those produced by previous digest algorithms in spite of the fact that t-digests are much more compact when stored on disk.

Basic usage

For the basic use case the extension provides four aggregate functions. The tdigest_percentile ones can be seen as a replacement for the percentile_cont aggregate, while the tdigest_percentile_of ones perform the inverse operation, estimating the relative rank of a given value:

  • tdigest_percentile(value double precision, compression int, quantile double precision)

  • tdigest_percentile(value double precision, compression int, quantiles double precision[])

  • tdigest_percentile_of(value double precision, compression int, hypothetical_value double precision)

  • tdigest_percentile_of(value double precision, compression int, hypothetical_values double precision[])

That is, instead of running

SELECT percentile_cont(0.95) WITHIN GROUP (ORDER BY a) FROM t

you might now run

SELECT tdigest_percentile(a, 100, 0.95) FROM t

and similarly for the variants with an array of percentiles. This should run much faster, as the t-digest does not require sorting all the data and can be parallelized. Also, the memory usage is very limited, depending on the compression parameter.

Accuracy

Functions building t-digests accept a compression parameter that controls the trade-off between accuracy, digest size, memory use and processing cost. Larger values generally retain more, smaller centroids. The accepted range is [10, 10000]; values outside this range are rejected with an error.

Compression is neither the number of centroids nor an error bound. Accuracy depends on the data distribution, input order and history of merging digests. There is no general 1/N error guarantee for a digest with N centroids, and compression 100 does not promise 1% error relative to the range of data values. Values such as 100, used in the examples, are starting points to evaluate against exact results on representative data.

The algorithm allows smaller centroid weights near quantiles 0.0 and 1.0 than near the median. This concentrates resolution in the tails, but does not impose a fixed error bound in the units of the input values.

Digest size and storage

The centroid buffer holds at most 10 * compression centroids, including uncompacted input. A compacted digest is usually much smaller. Each centroid stores an 8-byte double precision mean and an 8-byte integer count. With the 24-byte full header, a digest uses 24 + 16 * ncentroids bytes before any TOAST processing. The largest permitted value therefore has 100000 centroids and occupies 1,600,024 bytes (about 1.53 MiB).

The on-disk digests are typically much smaller than the centroid buffer, due to compaction which merges centroids depending on how close to the median of the dataset they lie.

The type uses PostgreSQL's EXTERNAL storage policy by default. This allows large values to be stored out of line using TOAST, but does not compress them. A column can use EXTENDED storage to permit TOAST compression; changing that setting does not itself rewrite existing values. Tuple and TOAST overhead are additional to the size of the digest.

Here is a table of sizes for digests with different compression values, built on random data:

compression centroids length (B) external (B) extended (B)
10 18 305 309 308
50 40 655 659 658
100 61 993 997 997
200 100 1616 1620 1624
500 203 3275 3275 2238
1000 357 5732 5732 3765
2000 627 10058 10058 6432
5000 1318 21113 21113 12646
10000 2265 36260 36260 20177

Where centroids is the number of centroids in a compacted digest, length is the "raw" size of the digest. external and extended are the on-disk sizes of centroid, depending on the storage policy set for the column. It's clear that external is almost the same as length, while extended is often much smaller thanks to compression.

This is merely an example - the actual values depend on the data. For example digests on integer values tend to be much more compressible, cutting the extended size about in half.

Advanced usage

The extension also provides a tdigest data type, which makes it possible to precompute digests for subsets of data, and then quickly combine those "partial" digests into a digest representing the whole data set. The prebuilt digests should be much smaller compared to the original data set, allowing significantly faster response times.

To compute a t-digest, use the tdigest aggregate function. The digests can then be stored on disk and later summarized using the tdigest_percentile functions (with tdigest as the first argument).

  • tdigest(value double precision, compression int)

  • tdigest(digest tdigest)

  • tdigest_percentile(digest tdigest, quantile double precision)

  • tdigest_percentile(digest tdigest, quantiles double precision[])

  • tdigest_percentile_of(digest tdigest, hypothetical_value double precision)

  • tdigest_percentile_of(digest tdigest, hypothetical_values double precision[])

The tdigest(digest tdigest) variant is an aggregate merging multiple pre-computed digests into a single digest, which can be stored again.

Digest-input aggregates accept digests with different compression settings. Each aggregate state takes its compression from its first non-NULL digest; with parallel aggregation, the final choice can depend on worker and combine order. Use a consistent compression across input digests when that choice matters. Merging cannot recover detail already lost by compaction.

So for example you may do this:

-- table with some random source data, with "a" usable as a count of
-- occurrences (so it has to be positive)
CREATE TABLE t (a int, b int, c double precision);

INSERT INTO t SELECT 1 + 10 * random(), 10 * random(), random()
                FROM generate_series(1,10000000);

-- table with pre-aggregated digests
CREATE TABLE p AS SELECT a, b, tdigest(c, 100) AS d FROM t GROUP BY a, b;

-- summarize the data from "p" (compute the 95th percentile)
SELECT a, tdigest_percentile(d, 0.95) FROM p GROUP BY a ORDER BY a;

An example run produced a much smaller pre-aggregated table:

db=# \d+
                         List of relations
 Schema | Name | Type  | Owner | Persistence |  Size  | Description 
--------+------+-------+-------+-------------+--------+-------------
 public | p    | table | user  | permanent   | 120 kB | 
 public | t    | table | user  | permanent   | 422 MB | 
(2 rows)

On the same machine, the last query took about 1.5 ms. Compare that to the following example timings on the source data; sizes and timings will vary with the data, PostgreSQL version and hardware:

\timing on

-- exact results
SELECT a, percentile_cont(0.95) WITHIN GROUP (ORDER BY c)
  FROM t GROUP BY a ORDER BY a;
  ...
Time: 6956.566 ms (00:06.957)

-- tdigest estimate (no parallelism)
SET max_parallel_workers_per_gather = 0;
SELECT a, tdigest_percentile(c, 100, 0.95) FROM t GROUP BY a ORDER BY a;
  ...
Time: 2873.116 ms (00:02.873)

-- tdigest estimate (4 workers)
SET max_parallel_workers_per_gather = 4;
SELECT a, tdigest_percentile(c, 100, 0.95) FROM t GROUP BY a ORDER BY a;
  ...
Time: 893.538 ms

This illustrates how much faster the t-digest estimate can be than the exact query with percentile_cont. The difference can increase when sorting larger data sets requires spilling to disk.

It also shows how effective the pre-aggregation can be. In this example, there are 121 rows in table p, so with 120kB disk space that's ~1kB per row, each representing about 80k values. With 8B per value, that's ~640kB, or a compression ratio of about 640:1. For a fixed number of groups and a fixed compression, digest storage is bounded while the raw data grows.

Pre-aggregated data

When dealing with data sets with a lot of redundancy (values repeating many times), it may be more efficient to partially pre-aggregate the data and use functions that allow specifying the number of occurrences for each value. This reduces the number of SQL-function calls.

There are seven such aggregate functions:

  • tdigest(value double precision, count bigint, compression int)

  • tdigest_percentile(value double precision, count bigint, compression int, quantile double precision)

  • tdigest_percentile(value double precision, count bigint, compression int, quantiles double precision[])

  • tdigest_percentile_of(value double precision, count bigint, compression int, hypothetical_value double precision)

  • tdigest_percentile_of(value double precision, count bigint, compression int, hypothetical_values double precision[])

  • tdigest_avg(value double precision, count bigint, compression int, low double precision, high double precision)

  • tdigest_sum(value double precision, count bigint, compression int, low double precision, high double precision)

A non-NULL count must be positive and determines how many times the value is added to the digest. A NULL count means one occurrence. The total count in a digest must fit in a bigint; exceeding 9223372036854775807 raises an error. See the "trimmed aggregates" section for the low and high parameters.

Incremental updates

An existing t-digest may be updated incrementally, either by adding a single value, or by merging-in a whole t-digest. The following examples use the table p with the pre-aggregated digests (in column d), built in Advanced usage. Each example adds the same new values to every row of p; use a WHERE clause when updating only selected groups.

For example, it's possible to add 1000 random values to the t-digests like this:

DO LANGUAGE plpgsql $$
DECLARE
  r record;
BEGIN
  FOR r IN (SELECT random() AS v FROM generate_series(1,1000)) LOOP
    UPDATE p SET d = tdigest_add(d, r.v);
  END LOOP;
END $$;

The overhead of doing this is fairly high, though - the t-digest has to be deserialized and serialized over and over, for each value we're adding. That overhead may be reduced by pre-aggregating data, either into an array or a t-digest.

DO LANGUAGE plpgsql $$
DECLARE
  vals double precision[];
BEGIN
  SELECT array_agg(random()) INTO vals FROM generate_series(1,1000);
  UPDATE p SET d = tdigest_add(d, vals);
END $$;

Alternatively, it's possible to use pre-aggregated t-digest values instead of the arrays:

WITH batch AS (
    SELECT tdigest(random(), 100) AS d FROM generate_series(1,1000)
)
UPDATE p SET d = tdigest_union(p.d, batch.d) FROM batch;

It may be undesirable to perform compaction after every incremental update, especially when adding values one by one. Setting compact to false skips compaction at the end of the call; compaction still occurs when adding to a full centroid buffer. The result may be unsorted and larger than a compacted digest, but remains subject to the 10 * compression centroid limit.

Use the multi-value functions with compaction after each batch when possible, or compact a stored digest by re-aggregating it:

UPDATE p SET d = (SELECT tdigest(x) FROM (SELECT p.d) s(x));

Adding a NULL value or a NULL array with tdigest_add returns the original digest unchanged. A non-NULL value or array with a NULL digest instead creates a new digest and requires a compression value.

When either input to tdigest_union is NULL, it returns the other digest unchanged, without compaction; two NULL digests produce NULL. In all incremental functions, the compact flag itself must not be NULL, even for calls that otherwise do nothing.

Trimmed aggregates

The extension provides aggregate functions allowing to calculate trimmed (truncated) sum and average, either directly from the values or from a pre-computed digest:

  • tdigest_sum(value double precision, compression int, low double precision, high double precision)

  • tdigest_sum(value double precision, count bigint, compression int, low double precision, high double precision)

  • tdigest_sum(digest tdigest, low double precision, high double precision)

  • tdigest_avg(value double precision, compression int, low double precision, high double precision)

  • tdigest_avg(value double precision, count bigint, compression int, low double precision, high double precision)

  • tdigest_avg(digest tdigest, low double precision, high double precision)

The low and high parameters specify where to truncate the data. They are percentiles (not values), so both have to be in [0.0, 1.0] with low <= high, otherwise an error is raised. For example low = 0.1 and high = 0.9 means the lowest and highest 10% of the values are discarded.

There are also two non-aggregate functions, calculating the trimmed sum and average for a single tdigest value:

  • tdigest_digest_sum(digest tdigest, low double precision DEFAULT 0.0, high double precision DEFAULT 1.0)

  • tdigest_digest_avg(digest tdigest, low double precision DEFAULT 0.0, high double precision DEFAULT 1.0)

The difference between tdigest_sum(digest, low, high) and tdigest_digest_sum(digest, low, high) is that the former is an aggregate (combining all the digests in a group first), while the latter is a plain function processing a single digest value (and thus may be combined with other columns without a GROUP BY clause).

Functions

The following list covers the aggregates and utility functions provided by this extension. Type I/O functions and internal aggregate support functions are not listed. The accuracy parameter in these descriptions is the compression used when building the t-digest, as described in the Accuracy section.

The tdigest, tdigest_percentile, tdigest_percentile_of, tdigest_avg and tdigest_sum functions are aggregates (all of them parallel safe), while tdigest_count, tdigest_add, tdigest_union, tdigest_json, tdigest_double_array, tdigest_digest_sum, tdigest_digest_avg and tdigest_is_valid are plain functions operating on tdigest values.

The examples use a table t with the values in column c, and - for the variants with a count parameter - the number of occurrences of each value in column a. Non-NULL counts must be positive; a NULL count means one occurrence.

Common argument rules

Aggregates ignore NULL input values or digests and return SQL NULL when there are no non-NULL inputs. This also applies to the array-returning aggregates: empty input produces NULL, not an empty array. Values added to a digest must be finite; NaN and positive or negative infinity are rejected.

Compression, requested percentiles or hypothetical values, and trim thresholds must be non-NULL when the aggregate state is initialized. Keep these arguments constant within each group. The implementation captures them on the first non-NULL input of each state, rather than checking them on every row; later changes are ignored and can give order-dependent results, especially in parallel queries. The input value and its count may vary between rows.

Requested percentiles must be in [0, 1]. Arrays of percentiles or hypothetical values must be nonempty, one-dimensional, and contain no NULL elements. Array results follow the order of the requested elements and have the usual lower bound of 1, regardless of the input array's lower bound.

All tdigest_percentile_of variants estimate a smoothed relative rank, counting half of an equal-mean centroid group's weight at that mean. This is not an exact count of smaller values. Hypothetical values may be non-finite: -Infinity, Infinity and NaN return 0, 1 and NaN, respectively, when the aggregate has non-NULL input.

The non-incremental scalar functions return NULL if any argument is NULL. The incremental functions have the initialization and no-op rules described in Incremental updates.

tdigest_percentile(value, accuracy, percentile)

Computes a requested percentile from the data, using a t-digest with the specified accuracy.

Synopsis

SELECT tdigest_percentile(t.c, 100, 0.95) FROM t

Parameters

  • value - values to aggregate
  • accuracy - accuracy of the t-digest
  • percentile - value in [0, 1] specifying the percentile

tdigest_percentile(value, count, accuracy, percentile)

Computes a requested percentile from the data, using a t-digest with the specified accuracy.

Synopsis

SELECT tdigest_percentile(t.c, t.a, 100, 0.95) FROM t

Parameters

  • value - values to aggregate
  • count - number of occurrences of the value
  • accuracy - accuracy of the t-digest
  • percentile - value in [0, 1] specifying the percentile

tdigest_percentile(value, accuracy, percentile[])

Computes requested percentiles from the data, using a t-digest with the specified accuracy.

Synopsis

SELECT tdigest_percentile(t.c, 100, ARRAY[0.95, 0.99]) FROM t

Parameters

  • value - values to aggregate
  • accuracy - accuracy of the t-digest
  • percentile[] - array of values in [0, 1] specifying the percentiles

tdigest_percentile(value, count, accuracy, percentile[])

Computes requested percentiles from the data, using a t-digest with the specified accuracy.

Synopsis

SELECT tdigest_percentile(t.c, t.a, 100, ARRAY[0.95, 0.99]) FROM t

Parameters

  • value - values to aggregate
  • count - number of occurrences of the value
  • accuracy - accuracy of the t-digest
  • percentile[] - array of values in [0, 1] specifying the percentiles

tdigest_percentile_of(value, accuracy, hypothetical_value)

Computes relative rank of a hypothetical value, using a t-digest with the specified accuracy.

Synopsis

SELECT tdigest_percentile_of(t.c, 100, 139832.3) FROM t

Parameters

  • value - values to aggregate
  • accuracy - accuracy of the t-digest
  • hypothetical_value - hypothetical value

tdigest_percentile_of(value, count, accuracy, hypothetical_value)

Computes relative rank of a hypothetical value, using a t-digest with the specified accuracy.

Synopsis

SELECT tdigest_percentile_of(t.c, t.a, 100, 139832.3) FROM t

Parameters

  • value - values to aggregate
  • count - number of occurrences of the value
  • accuracy - accuracy of the t-digest
  • hypothetical_value - hypothetical value

tdigest_percentile_of(value, accuracy, hypothetical_value[])

Computes relative ranks of hypothetical values, using a t-digest with the specified accuracy.

Synopsis

SELECT tdigest_percentile_of(t.c, 100, ARRAY[6343.43, 139832.3]) FROM t

Parameters

  • value - values to aggregate
  • accuracy - accuracy of the t-digest
  • hypothetical_value - hypothetical values

tdigest_percentile_of(value, count, accuracy, hypothetical_value[])

Computes relative ranks of hypothetical values, using a t-digest with the specified accuracy.

Synopsis

SELECT tdigest_percentile_of(t.c, t.a, 100, ARRAY[6343.43, 139832.3]) FROM t

Parameters

  • value - values to aggregate
  • count - number of occurrences of the value
  • accuracy - accuracy of the t-digest
  • hypothetical_value - hypothetical values

tdigest(value, accuracy)

Computes t-digest with the specified accuracy.

Synopsis

SELECT tdigest(t.c, 100) FROM t

Parameters

  • value - values to aggregate
  • accuracy - accuracy of the t-digest

tdigest(value, count, accuracy)

Computes t-digest with the specified accuracy. The values are added with as many occurrences as determined by the count parameter.

Synopsis

SELECT tdigest(t.c, t.a, 100) FROM t

Parameters

  • value - values to aggregate
  • count - number of occurrences for each value
  • accuracy - accuracy of the t-digest

tdigest(digest)

Merges pre-computed t-digests into a single t-digest. This is also the way to force compaction of a digest built with compact = false.

Synopsis

SELECT tdigest(d) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t GROUP BY t.a
) foo

Parameters

  • digest - t-digests to merge

tdigest_count(tdigest)

Returns the number of items represented by the t-digest. This is a plain function, not an aggregate.

Synopsis

SELECT tdigest_count(d) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo

Parameters

  • tdigest - t-digest to inspect

tdigest_percentile(tdigest, percentile)

Computes requested percentile from the pre-computed t-digests.

Synopsis

SELECT tdigest_percentile(d, 0.99) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo

Parameters

  • tdigest - t-digest to aggregate and process
  • percentile - value in [0, 1] specifying the percentile

tdigest_percentile(tdigest, percentile[])

Computes requested percentiles from the pre-computed t-digests.

Synopsis

SELECT tdigest_percentile(d, ARRAY[0.95, 0.99]) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo

Parameters

  • tdigest - t-digest to aggregate and process
  • percentile - values in [0, 1] specifying the percentiles

tdigest_percentile_of(tdigest, hypothetical_value)

Estimates the relative rank of a hypothetical value using a pre-computed t-digest.

At an exact centroid mean, half of the total weight of all centroids with that mean is counted. A digest containing only copies of one value therefore returns 0.5 at that value, not the fraction of rows strictly below it (0.0). This is a smoothed rank estimate, not an exact count of smaller values.

Synopsis

SELECT tdigest_percentile_of(d, 349834.1) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo

Parameters

  • tdigest - t-digest to aggregate and process
  • hypothetical_value - hypothetical value

tdigest_percentile_of(tdigest, hypothetical_value[])

Estimates relative ranks of hypothetical values using a pre-computed t-digest, with the same half-weight convention at centroid means as the scalar form.

Synopsis

SELECT tdigest_percentile_of(d, ARRAY[438.256, 349834.1]) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo

Parameters

  • tdigest - t-digest to aggregate and process
  • hypothetical_value - hypothetical values

tdigest_add(tdigest, double precision, compression = NULL, compact = true)

Performs incremental update of the t-digest by adding a single value.

Synopsis

UPDATE p SET d = tdigest_add(d, random());

Parameters

  • tdigest - t-digest to update (may be NULL)
  • element - value to add; NULL leaves the digest unchanged
  • compression - required to initialize a digest from a non-NULL value; ignored for an existing digest (default: NULL)
  • compact - compact at the end of the call (default: true; must not be NULL)

tdigest_add(tdigest, double precision[], compression = NULL, compact = true)

Performs incremental update of the t-digest by adding values from an array.

Synopsis

UPDATE p SET d = tdigest_add(d, ARRAY[random(), random(), random()]);

Parameters

  • tdigest - t-digest to update (may be NULL)
  • elements - nonempty, one-dimensional array of non-NULL values; a NULL array leaves the digest unchanged
  • compression - required to initialize a digest from a non-NULL array; ignored for an existing digest (default: NULL)
  • compact - compact at the end of the call (default: true; must not be NULL)

tdigest_union(tdigest, tdigest, compact = true)

Performs incremental update of the t-digest by merging-in another digest. When either of the digests is NULL, the other one is returned unchanged (without compaction). When both are non-NULL, the result uses the compression of digest1, even if digest2 has a different compression.

Synopsis

WITH x AS (SELECT tdigest(random(), 100) AS d FROM generate_series(1,1000))
UPDATE p SET d = tdigest_union(p.d, x.d) FROM x;

Parameters

  • digest1 - t-digest to update
  • digest2 - t-digest to merge into digest1
  • compact - compact at the end of the call (default: true; must not be NULL)

tdigest_json(tdigest)

Returns the t-digest as a JSON value. The function is also exposed as a cast from tdigest to json.

The document has the flags, the total number of items (count), the compression and the number of centroids, followed by the per-centroid means and counts arrays.

Synopsis

SELECT tdigest_json(d) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo;

SELECT CAST(d AS json) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo;

Parameters

  • tdigest - t-digest to cast to a json value

tdigest_double_array(tdigest)

Returns the t-digest as a double precision[] array. The function is also exposed as a cast from tdigest to double precision[]. The array contains the flags, the total number of items, the compression and the number of centroids, followed by a (mean, count) pair for each centroid.

Synopsis

SELECT tdigest_double_array(d) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo;

SELECT CAST(d AS double precision[]) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo;

Parameters

  • tdigest - t-digest to cast to a double precision[] value

tdigest_avg(value, accuracy, low, high)

Computes trimmed mean of values, discarding values at the low and high end. The low and high values are percentiles in [0, 1] (with low <= high) specifying which part of the sample should be included in the mean, so e.g. low = 0.1 and high = 0.9 means 10% low and high values will be discarded.

Synopsis

SELECT tdigest_avg(t.c, 100, 0.1, 0.9) FROM t

Parameters

  • value - values to aggregate
  • accuracy - accuracy of the t-digest
  • low - low threshold percentile (values below are discarded)
  • high - high threshold percentile (values above are discarded)

tdigest_avg(value, count, accuracy, low, high)

Computes trimmed mean of values, discarding values at the low and high end. The low and high values are percentiles in [0, 1] (with low <= high) specifying which part of the sample should be included in the mean, so e.g. low = 0.1 and high = 0.9 means 10% low and high values will be discarded.

Synopsis

SELECT tdigest_avg(t.c, t.a, 100, 0.1, 0.9) FROM t

Parameters

  • value - values to aggregate
  • count - number of occurrences of the value
  • accuracy - accuracy of the t-digest
  • low - low threshold percentile (values below are discarded)
  • high - high threshold percentile (values above are discarded)

tdigest_avg(tdigest, low, high)

Computes trimmed mean of values, discarding values at the low and high end. The low and high values are percentiles in [0, 1] (with low <= high) specifying which part of the sample should be included in the mean, so e.g. low = 0.1 and high = 0.9 means 10% low and high values will be discarded.

Synopsis

SELECT tdigest_avg(d, 0.05, 0.95) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo;

Parameters

  • tdigest - tdigest to calculate mean from
  • low - low threshold percentile (values below are discarded)
  • high - high threshold percentile (values above are discarded)

tdigest_sum(value, accuracy, low, high)

Computes trimmed sum of values, discarding values at the low and high end. The low and high values are percentiles in [0, 1] (with low <= high) specifying which part of the sample should be included in the sum, so e.g. low = 0.1 and high = 0.9 means 10% low and high values will be discarded.

Synopsis

SELECT tdigest_sum(t.c, 100, 0.1, 0.9) FROM t

Parameters

  • value - values to aggregate
  • accuracy - accuracy of the t-digest
  • low - low threshold percentile (values below are discarded)
  • high - high threshold percentile (values above are discarded)

tdigest_sum(value, count, accuracy, low, high)

Computes trimmed sum of values, discarding values at the low and high end. The low and high values are percentiles in [0, 1] (with low <= high) specifying which part of the sample should be included in the sum, so e.g. low = 0.1 and high = 0.9 means 10% low and high values will be discarded.

Synopsis

SELECT tdigest_sum(t.c, t.a, 100, 0.1, 0.9) FROM t

Parameters

  • value - values to aggregate
  • count - number of occurrences of the value
  • accuracy - accuracy of the t-digest
  • low - low threshold percentile (values below are discarded)
  • high - high threshold percentile (values above are discarded)

tdigest_sum(tdigest, low, high)

Computes trimmed sum of values, discarding values at the low and high end. The low and high values are percentiles in [0, 1] (with low <= high) specifying which part of the sample should be included in the sum, so e.g. low = 0.1 and high = 0.9 means 10% low and high values will be discarded.

Synopsis

SELECT tdigest_sum(d, 0.05, 0.95) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo;

Parameters

  • tdigest - tdigest to calculate sum from
  • low - low threshold percentile (values below are discarded)
  • high - high threshold percentile (values above are discarded)

tdigest_digest_avg(tdigest, low, high)

Calculates trimmed mean for a single t-digest value. Unlike tdigest_avg, this is a plain function, not an aggregate.

Synopsis

SELECT tdigest_digest_avg(d, 0.25, 0.75) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo;

Parameters

  • tdigest - t-digest to calculate the mean for
  • low - low threshold percentile (values below are discarded, default: 0.0)
  • high - high threshold percentile (values above are discarded, default: 1.0)

tdigest_digest_sum(tdigest, low, high)

Calculates trimmed sum for a single t-digest value. Unlike tdigest_sum, this is a plain function, not an aggregate.

Synopsis

SELECT tdigest_digest_sum(d, 0.25, 0.75) FROM (
    SELECT tdigest(t.c, 100) AS d FROM t
) foo;

Parameters

  • tdigest - t-digest to calculate the sum for
  • low - low threshold percentile (values below are discarded, default: 0.0)
  • high - high threshold percentile (values above are discarded, default: 1.0)

tdigest_is_valid(tdigest)

Checks whether the t-digest is valid, i.e. that it passes the same sanity checks as the input functions (parsing the text or binary representation). Returns true for valid digests, false otherwise.

Digests produced by the extension are always valid, and it's not possible to construct an invalid one through the input functions. But digests stored by older versions of the extension (which did not have all the checks) may be broken in various ways, and the values are not re-validated when read back. This function makes it possible to find such digests.

Synopsis

SELECT a, b FROM p WHERE NOT tdigest_is_valid(p.d);

Parameters

  • tdigest - t-digest to check

Notes

Input values and centroid means use double precision. PostgreSQL can convert other numeric types to it, as in the integer-valued examples, but those conversions can lose precision. The digest does not retain the native precision of bigint or numeric inputs.

The estimates do depend on the order of incoming data, and so may differ between runs. This applies especially to parallel queries, for which the workers generally see different subsets of data for each run (and build different digests, which are then combined together).

Security

If you believe you have found a security vulnerability in this repository, please report this form of this GitHub project. This creates a private communication channel between the reporter and the maintainers.

If you are absolutely unable to or have strong reasons not to use GitHub's vulnerability reporting workflow, please reach out to the maintainer at tomas@vondra.me.

Notes:

  • The code assumes digests stored on-disk are valid and not corrupted. If the suspected vulnerability requires a corrupted digest, without a way to create such digests (using the current version), it's not a security issue. This is in line with general assumptions in the Postgres code.

  • A valid vulnerability must not require superuser privileges. A superuser can do almost anything (ultimately can read/write memory) and does not need to bother with vulnerabilities.

Known issues

incorrect alignment

The SQL data type is defined without specifying the ALIGNMENT parameter, so it uses the default 4-byte alignment. Its C representation contains double and int64 fields that can require 8-byte alignment. Accessing misaligned fields may incur a performance penalty on amd64/arm64 and can cause SIGBUS crashes on platforms with strict alignment requirements.

The implementation handles this in tdigest_detoast() by making an aligned copy when necessary. Detoasting out-of-line values, compressed values or values with a short varlena header already produces an aligned allocation. Inline values with a 4-byte header need no copy during ordinary detoasting, so they may need the additional alignment copy.

Whether a digest stays inline depends on its actual centroid count, the other columns in the tuple, and the column's storage settings. There is no compression-parameter threshold that guarantees out-of-line storage, and the default EXTERNAL policy does not permit TOAST compression.

The extra copy requires an allocation and a single memcpy() of the digest. For small inline values, this overhead is usually modest.

The SQL data type retains its original 4-byte alignment for compatibility with existing on-disk values.

FINALFUNC_MODIFY = READ_ONLY

The final functions mutate the aggregate state (they sort it, and most of them also compact it), which means FINALFUNC_MODIFY should not be READ_ONLY. It is, though, because that's what the aggregates were created with, and changing it would break upgrades of existing installations.

Instead, each final function that would damage the state checks AggStateIsShared(), and works on a copy when the state may be needed again - that is, when the aggregate is used as a window function, or when several aggregates share a single transition state. So the results are correct in those cases, at the cost of copying the state.

The two exceptions are the final functions of the trimmed tdigest_sum() and tdigest_avg() aggregates, which only sort the state. Sorting is just a permutation of the centroids, and the state is sorted anyway before it's used, so there's nothing to protect and no copy is made.

fused multiply-add (FMA)

Various places in the code use expressions of the form a * b + c (e.g. when calculating the mean of two merged centroids, or when interpolating between two centroid means). Compilers are allowed to contract such expressions into a single fused multiply-add (FMA) instruction, which rounds only once, and so produces slightly different results than a separate multiplication and addition.

Whether that happens depends on the platform and on the compiler flags. FMA is part of the baseline instruction set on aarch64, so gcc contracts by default there (at -O2 and higher - the contraction happens in a pass enabled only by -O2), while on x86-64 it does not, because FMA requires -mfma or a sufficiently recent -march. The results then differ in the last couple of digits, and the regression tests - which compare the exact float8 output - fail.

For now, the Makefile builds with -ffp-contract=off, if the compiler understands the option, so that the results do not depend on which instructions happen to be available. The option is added to both CFLAGS and BITCODE_CFLAGS, because the LLVM bitcode used for JIT inlining is compiled separately and does not inherit CFLAGS. Compilers spelling the option differently (or not having it at all) may still produce digests that differ in the last digit or two.

This is merely a workaround to make the tests pass. Ideally, we want to allow FMA, because it's expected to be faster and give more precise results (thanks to a single rounding).

License

This software is distributed under the terms of the PostgreSQL license. See LICENSE or https://www.postgresql.org/about/licence/ for more details.

[1] https://github.com/tdunning/t-digest

[2] https://github.com/tdunning/t-digest/blob/master/docs/t-digest-paper/histo.pdf

[3] https://github.com/ajwerner/tdigestc

[4] https://github.com/ajwerner/tdigest

[5] https://github.com/tvondra/tdigest/security/advisories/new

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PostgreSQL extension for estimating percentiles using t-digest

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