Deepnote is a drop-in replacement for Jupyter with an AI-first design, sleek UI, new blocks, and native data integrations. Use Python, R, and SQL locally in your favorite IDE, then scale to Deepnot…

A 3D Slicer extension for efficient segmentation with nnInteractive.

(EXPERIMENTAL) Investigation of splitting NGFF specifications out of ome/ngff

Browse, share, and publish OME-Zarr data

An extensible framework for linking databases and interactive views.

A curated list of tools for analysis and visualization of synaptic resolution connectomics data

An interactive segmentation application that combines NiiVue and nnInteractive

Duck-UI is a web-based interface for interacting with DuckDB, a high-performance analytical database system. It features a SQL editor, data import/export, data explorer, query history, theme toggle…

A simple and flexible deep learning framework based on PyTorch and YAML configuration files.

High-Performance Rendering Framework on Stream Architectures

High-Performance Cross-Platform Monte Carlo Renderer Based on LuisaCompute

ClearMap 2 with WobblyStitcher, TubeMap and CellMap

[ICCV 2025] MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance

Catch MCP server issues before your agents do.

A CLI interface for Marp and Marpit based converters

sbomqs: The Comprehensive SBOM Quality & Compliance Tool

Contains material for the 2025 EMBO Practical course "Advanced methods in bioimage analysis" https://www.embl.org/about/info/course-and-conference-office/events/bia25-01/

Streaming directly to Zarr on the file system or S3

A community driven registry service for Model Context Protocol (MCP) servers.

Local first semantic and hybrid BM25 grep / search tool for use by AI and humans!

A lightweight, easy-to-use, and efficient library for processing and rendering 3D data (C++ & Python)

Reference PyTorch implementation and models for DINOv3

Qwen3-Coder is the code version of Qwen3, the large language model series developed by Qwen team, Alibaba Cloud.

Embedding Atlas is a tool that provides interactive visualizations for large embeddings. It allows you to visualize, cross-filter, and search embeddings and metadata.

Build, enrich, and transform datasets using AI models with no code

Lightweight JavaScript library that predicts user intent based on mouse movements and keyboard navigation. Perfect for smart prefetching. Also works for mobile!

Lightweight fuzzy-search, in JavaScript