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4 stars written in Nextflow
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RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 1,197 843 Updated Feb 6, 2026

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

Nextflow 63 37 Updated Jun 3, 2025

ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.

Nextflow 25 4 Updated Dec 5, 2024

Generation of sequence-level annotations for amino acid sequences

Nextflow 9 9 Updated Feb 5, 2026