Stars
Repository for data files and codes associated with the manuscript 'Eusociality evolved at a higher rate in haplodiploid insects'
3DGS Render by KIRI Engine
GOAT: efficient and robust identification of gene set enrichment
Multivariate Covariance Generalized Linear Models for the Analysis of Experimental Data
A non-parametric stable bootstrap-based technique to determine the numbers of components
a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
A Python-based model simulating the behaviour of the slime mould using the geometric data of Nanjing subway system.
A GPU-accelerated computing library for running physics simulations and other GPGPU computations in a web browser.
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact o…
a broadly applicable tool for automated gene identification and retrieval
ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.
Details the alignments of 3 Polistes transcriptomes to the P. dominula genome.
Describes a differential expression analysis of the P. dominula transcriptome
Details the assembly of the P. dominula transcriptome.
Source code for MA4270: Data Modelling and Computation on Transformers and Nadaraya-Watson Kernel Regression
MATLAB codes for computing various tensor decomposition.
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
Step-by-step tutorial to create synteny plots for pairs and trios of genomes using JCVI's MCScan
Python library to facilitate genome assembly, annotation, and comparative genomics
RNA secondary structure/sequence profiles for homology search and alignment
OrthoFinder / OrthoFinder
Forked from davidemms/OrthoFinderPhylogenetic orthology inference for comparative genomics
KOBAS: a command line tool for identifying significant pathways from genomic data