Simple script to generate Krona charts for all samples in an OTU table file
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Dec 7, 2018 - Shell
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16s
Here are 8 public repositories matching this topic...
rRNADif is a method to measure intragenomic 16S rRNA variability within the desired genome sequence against a chosen set of organisms. The app is calculating ML phylogenetic tree and uses mean/median branch length within a set of 16S rRNA as a measure of variability between them
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Feb 2, 2021 - Shell
rRNADif is a method to measure intragenomic 16S rRNA variability within the desired genome sequence against a chosen set of organisms. The app is calculating ML phylogenetic tree and uses mean/median branch length within a set of 16S rRNA as a measure of variability between them
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Updated
Feb 2, 2021 - Shell
Annotate PICRUSt2 functional IDs (KO, EC, Pfam, etc.) using description mapfiles
bioinformatics metagenomics microbiome ec 16s qiime functional-annotation pfam mothur ko picrust2 amplicon-data pathway-annotation amplicon-seq
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Jul 14, 2025 - Shell
Microbiome analysis pipeline with reference tutorial. This code was written in October 2024 to process rRNA marker gene data (16S and ITS) from rhizosphere soil samples.
unite high-throughput-sequencing 16s soil-sample rrna taxonomy-assignment its microbiome-analysis mafft dada2 marker-gene-analysis greengenes qiime2 microbiome-workflow fasttree microbiome-analysis-pipelines soil-microbiome rhizospheres
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Feb 4, 2025 - Shell
16S Microbiome Analysis Pipeline. This version written in Nextflow.
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Sep 29, 2020 - Shell
Comparing 3 different metagenomics approaches with ONT's long read sequencing method
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Updated
Dec 21, 2022 - Shell
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