tcgabiolinks

TCGAbiolinks

TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/

Example data to TCGAWorkflow

Examples on processing and working with TCGA mutation and RNA-Seq data

Nextflow pipeline integrating TCGA multi-omics with MOFA and downstream LASSO to reveal tissue-specific oncogene selection pressures

Genomic Data Commons Query

Example workflow for cancer genomics analysis using TCGA data

Scripts to manage biotab files from TCGA.

Creating a multi-plot for the representation and comparison of clinical data among TCGA cancer datasets.

TCGA Colorectal Cancer RNA seq Data Analysis Pipeline

Somatic mutations in TCGA lung adenocarcinoma — maftools workflow