DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.

An R package designed to integrate and visualize various levels of epigenomic information, including but not limited to: ChIP, Histone, ATAC, and RNA sequencing. epiRomics is also designed to identify enhancer and enhanceosome regions from these data.

target: An R Package to Predict Combined Function of Transcription Factors

All code generated for Loupe et al. 2023

In this module, you will learn how to perform the bioinformatics analysis of differential chromatin occupancy using data generated by three well-known high-throughput sequencing assaying, including differences between them and integration of chromatin accessibility and differential gene expression

This workflow identifies stage-specific transcription factor expression modules in time-series bulk RNA-seq data. The goal is to characterize the "waves" of TF expression that define each stage of a differentiation time-course, then use these control TF clusters as a baseline for assessing how experimental conditions alter this expression

Motif Visualisation and multi-omic integration tool

Django-based web application to explore and analyse Human Transcription Factors

Phylogeny and classification of Azolla filiculoides MYB genes

Hepatocyte-specific NRF2 activation controls fibrogenesis and carcinogenesis in steatohepatitis