A standalone library for minimising alleles to VCF standard

Java VCF Format Reader and Writer

Filtering vcf with population gvcf

A command-line parser for VCF files designed for population genetics analyses.

Java tool to import data in database from files

A Java GUI toolkit to manage Android sms/call, base64 encoder, vcf parser. Moved from my repository: https://sourceforge.net/projects/andoffline/

Useful NGS utilities for everyday use in the form of stand-alone tool.

Takes a vCard as input, outputs a folder full of contact photos

GBC (short for GenoType Blocking Compressor) is a blocking compressor for genotype data, which aims at creating a unified and flexible structure-GenoType Block (GTB) for genotype data in the variant call format (VCF) files.

Micro-libraries for reading and writing genomic sequence data in various formats.

Java tool to export data ifrom database in files

Random Vcard generator for Android. Generate a VCF file to scrap phone numbers

java parser for BCF2.2 format (Binary VCF format). The current HTSJDK only supports BCF2.1

(Legacy) Annotate variants for import into VarFish server.

A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)

iPat allows you to perform GWAS and GS with drags and clicks!

GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

Annotation of VCF variants with functional impact and from databases (executable+library)