A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)

java parser for BCF2.2 format (Binary VCF format). The current HTSJDK only supports BCF2.1

Useful NGS utilities for everyday use in the form of stand-alone tool.

Filtering vcf with population gvcf

A command-line parser for VCF files designed for population genetics analyses.

Micro-libraries for reading and writing genomic sequence data in various formats.

Takes a vCard as input, outputs a folder full of contact photos

A standalone library for minimising alleles to VCF standard

A Java GUI toolkit to manage Android sms/call, base64 encoder, vcf parser. Moved from my repository: https://sourceforge.net/projects/andoffline/

Java VCF Format Reader and Writer

Random Vcard generator for Android. Generate a VCF file to scrap phone numbers

Java tool to import data in database from files

(Legacy) Annotate variants for import into VarFish server.

GBC (short for GenoType Blocking Compressor) is a blocking compressor for genotype data, which aims at creating a unified and flexible structure-GenoType Block (GTB) for genotype data in the variant call format (VCF) files.

iPat allows you to perform GWAS and GS with drags and clicks!

Java tool to export data ifrom database in files

GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.

Annotation of VCF variants with functional impact and from databases (executable+library)