VCF's Supervisor Services / VKS Demo

Built around the vcf2tsv software. Make a tsv from a vcf for the excel lovers in your life.

Calling SNPs using TASSEL GBS V2 pipeline for ponderosa pine using the reference genome of loblolly pine

convert genotype array output into annotated IBD segments

Multi-class classification of drug resistance in MTB clinical isolates

Modify KASP assay calls to a VCF format

bcftools singularity container

Plethodontid salamander DNA capture kit

Variant annotation and filtration server ALAPY Genome Explorer

Multi-class classification of drug resistance in MTB clinical isolates

A bash script based pipeline to analyze Rad-seq data to get SNPs.

The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support

(Next-generation; in-development) VarFish Docker Compose

Scripts used on a cluster that demonstrate vcf file manipulation and preparation.

Pipeline for automated genomic variant analysis in inherited diseases, integrating alignment, variant calling, and quality control

GBS workflow using dDocent. This was designed to process GBS data from SEACONNECT project.

A Bioinformatics pipeline to process Raw reads to VCF files in Bash

Bash scripts for fastq to vcf pipeline, written for USyd Artemis HPC.

Variant discovery pipeline