Characterization of Germline variants

Generic human DNA variant annotation pipeline

vepyr (/ˈvaɪpər/) — VEP Yielding Performant Results — a blazing-fast Rust reimplementation of Ensembl's Variant Effect Predictor.

population structural variant calling with smoove

A local API-based biological engine that uses Tracy for sequence alignment and VEP for variant annotation. Built with Python for computational biology and bioinformatics analysis.

Repository for the I-VEP BCI paradigm

Variant annotation of vcf file using exac and vep

Automated variant annotation pipeline, and curated OMIM and ClinVar SNV datasets, developed by Martina Debnath.

Public verification URL for QSP product contracts with compatibility guarantees, fail-closed enforcement, and deterministic trust exposure.

Persistent verification result URL UI with JSON storage, enabling shareable and reloadable verification records for QSP/VEP.

REMEDA Stage302: Proxy API enabling external verification via Stage289 while solving browser CORS limitations and establishing a SaaS architecture.

Automated variant interpretation pipeline using VEP, ANNOVAR, and LLaMA3.

AI vulnerability verification demo using the Stage299 QSP/VEP Gate engine.

REMEDA YubiKey complete edition: GPG/YubiKey signing, Sigstore comparison, verify command, and Stage289 API integration.

A Python CLI tool for veterinary professionals and researchers to analyze tumor DNA sequences, search veterinary literature, and generate comprehensive evidence-based reports using AI-powered agentic workflows.

Public Verification API for QSP/VEP returning decision, trust score, and evidence. Signing is local-only; public endpoint is verification-first.

Signature-aware QSP/VEP Gate engine that decides accept, pending, or reject based on evidence validity and signature status.

Stage314 exposes signed verification results as a public, reproducible trust layer with GitHub Pages, enabling independent validation and accountability.