A snakemake workflow for WGS-based tuberculosis transmission analysis
-
Updated
Dec 3, 2024 - HTML
#
wgs
Here are 8 public repositories matching this topic...
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. …
-
Updated
Aug 9, 2018 - HTML
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
genome nextflow sequencing wgs ngs-analysis outbreak-detection bacterial-genomes outbreaks bacterial-wgs-training wgs-analysis
-
Updated
Oct 31, 2024 - HTML
Transcriptional variant verification to validate predicted variants from genomic data in expressed transcripts
-
Updated
Jul 3, 2025 - HTML
A fully automated and reproducible Whole Genome Sequencing (WGS) pipeline built with Snakemake. Implements GATK Best Practices for alignment (BWA), variant calling, and functional annotation (SnpEff) on human (GRCh38) data.
-
Updated
Nov 21, 2025 - HTML
Code, data, and results for the phylogenetic resistance manuscript
-
Updated
Sep 23, 2025 - HTML
Improve this page
Add a description, image, and links to the wgs topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the wgs topic, visit your repo's landing page and select "manage topics."