Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. …
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
A snakemake workflow for WGS-based tuberculosis transmission analysis
Transcriptional variant verification to validate predicted variants from genomic data in expressed transcripts
Code, data, and results for the phylogenetic resistance manuscript
A fully automated and reproducible Whole Genome Sequencing (WGS) pipeline built with Snakemake. Implements GATK Best Practices for alignment (BWA), variant calling, and functional annotation (SnpEff) on human (GRCh38) data.
Add a description, image, and links to the wgs topic page so that developers can more easily learn about it.
To associate your repository with the wgs topic, visit your repo's landing page and select "manage topics."