A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.

A vocabulary for describing Zebrafish Phenotypes

Software for performing offline tracking of zebrafish larvae.

Computing functional maps in zebrafish brain

Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"

Data packages for the research project "Behavioral and biochemical effects of ethanol withdrawal in zebrafish"

Napari plugin for spatial RNA quantification

Set of functions, scripts and notebooks used in the brain-wide auditory processing project

A lab rotation with the systems neuroscience lab, University of Tuebingen, where we tested whether color contrast contributed to encoding motion in direction selective cells of the zebrafish optic tectum.

Zebrafish project for Champalimaud Research

Zebrafish embryo fluorescence quantification

A simple tool for zebrafish brain visualization.

This is a collection of Knime workflows developed for the analysis of the data obtained with the FishInspector software

Data packages for the research project "Participation of serotonin on zebrafish aggression"

🐟 Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

SABER: Selection of Amplicon Barcodes from Experimental Replicates

CV Zebrafish — a modular software tool to track and analyze zebrafish movements from high-speed imaging. It integrates with DeepLabCut outputs to compute metrics like fin angles, movement timing, speed, and behavior classification

Capstone Project for my Data Scientist Certification based on data from my PhD thesis: "High-content screening for cardiovascular modulators in zebrafish (Danio rerio)"

Code for 3D reconstruction and anatomical annotation of lipid mass spectrometry imaging (MSI) data from zebrafish embryos (Nature Methods, 2025).

Software for analyis of zebrafish embryo sponaneous tail contractions and photomotor response