A fully reproducible and state-of-the-art ancient DNA analysis pipeline
Coprolite host Identification pipeline
R Package - Spatiotemporal Ancestry Interpolation and Search
The mitochondrial workbench
Tool repositiory for bam files
Ancient DNA Read Simulator for Metagenomic
Repository for data, code & figures related to the publication: "Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic"
🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets
A Snakemake-based pipeline for processing and quality-controlling ancient and historical DNA data, including taxonomic assessment and comparative genomic analysis across time points, producing damage-rescaled, mapped reads ready for downstream analyses.
A realistic-ish aDNA simulator
Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach
A free and easy-to-use pipeline to analyse data from ancient NCR-mtDNA sequences obtained by amplicon-based NGS methods
Research compendium for ‘Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data’; If you want to perform spatio-temporal similary search with the mobest R package as presented in the paper, then you can directly check the documentation here: https://nevrome.de/mobest
Universal AGI with Blockchain-Based Artificial DNA (ADNA) - Whitepaper
An archaeogenetic genotype data organisation file format
Estimating temporally variable selection intensity from ancient DNA data
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