(Meta-)genome screening for functional and natural product gene sequences

Plasmid assembly, gene identification and annotation pipeline

Pathogen whole genome sequence (WGS) data analysis pipeline

A scalable Nextflow pipeline for automated WGS analysis, optimized for Oxford Nanopore and hybrid ONT–Illumina assemblies in clinical microbiology research.

A Nextflow pipeline for bacterial and viral pathogen analysis — designed for public health applications.