🌠 Easily download genomes and build BLAST/Bowtie indexes in Python
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Sep 30, 2022 - Python
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bowtie
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A Nextflow pipeline that is designed to identify potential RNAi oligo candidates from a set of target genes and screen them for off-target effects by aligning them against a comprehensive reference genome or transcriptome.
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Jan 13, 2026 - Python
Different approaches to calculate mappability and GC-rich tracks for danio rerio genomes
gem genome repeats ngs genome-annotation genome-browser bowtie zebrafish mappability alignability danio-rerio tsslab
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Nov 9, 2018 - Python
Expanded version of the traditional Smith Waterman algorithm for local alignment
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Sep 12, 2017 - Python
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