SPACEmapX

This repository contains the R code and data files for simulating a 1D chemokine gradient in heterogeneous tumors, aiming to replicate the observed T-cell distribution within tumors.

Contains code related to my multi-omics integration project at WEHI.

scRNASeq drug discovery and biomarker project

Unraveling Socioeconomic Factors in the U.S. Cancer Incidence : A Linear Modeling Approach

This workshop is designed to provide beginners with foundational understanding of R programming language. Through a combination of theoretical explanations, hands-on coding exercises, and practical applications, participants will learn how to leverage R for data analysis, manipulation and visualization cancer biology datasets.

Set of standardized functions to operate with genomic data

Robust Decision Making Tools for Cancer Screening Models

Functions and data relevant to the tutorials published on the WeChat official account MedBioInfoCloud are encapsulated in this R package.

Creating a classifier for bladder cancer using Elastic Net Regression

Human gene annotations for the oncology domain

Companion for the 2024 manuscript in BMC Cancer entitled "Neighborhood-Level Deprivation and Survival in Lung Cancer"

Two-parameter Bayesian logistic dose-escalation model to find the maximum tolerated dose (MTD) of HTL0039732 agent alone and in combination with a backbone agent in patients with solid tumours.

Supplementary R scripts for the manuscript "Disrupting PGE2/EP3 signaling in cancer-associated fibroblasts limits mammary carcinoma growth but promotes metastasis"

Cancer breakpoints hotspots prediction

AI agent skills for cancer biology and multi-omics research

Collante V, Contreras-Gallardo F, Fuentes F, Fuentes J, Guerrero-Barría A, Guiñez-Sanhueza I, Inostroza C, Ojeda-Altamirano J, Navarrete J, Venegas-Carrasco C. Mortalidad por cáncer gástrico en la región del Biobío durante los años 2012 a 2022. Concepción: Universidad de Concepción; 2025.

Using Keras to build a deep neural network for bladder cancer progression