clinical-informatics

OpenScribe is an open-source AI scribe that records patient encounters and generates structured clinical notes automatically. You keep full control over data, workflows, and patient privacy with no vendor lock-in.

Open-source Node.js FHIR MCP server with SMART Backend Services, metadata-aware search/CRUD tools, compact responses, FHIRPath filtering, safe pagination, audit events, and terminology lookup.

Chrome extension with LLM integration for clinicians to query OpenEvidence directly from text—AI-powered PICO question rewriting using Groq for evidence-based medicine workflows

Website for the JuliaHealth organization (powered by Franklin.jl).

Survival functions for DataSHIELD. Package for building survival models, Cox proportional hazards models and Cox regression models in DataSHIELD.

Python SDK for OMOP/OHDSI vocabularies - query 10M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 90+ terminologies via simple API

R SDK for OMOP/OHDSI vocabularies. Query 10M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 90+ terminologies via simple API

Single-file PyTorch pipeline for pathogen class prediction on MIMIC-III/IV EHR data. Hybrid Conv1D+BiLSTM+numeric model, streaming CSV ETL without pandas, ECE calibration, ROC/PR-AUC, and subgroup bias checks. Research and education only.

Automated generation of CDISC SDTM mapping specifications from REDCap field annotations, including CRF variable mapping, codelist management, REDCap choice alternatives, and similarity-based mapping between SDTM Submission Values and REDCap terms.

Detect anomalies in pharmacological profiles using machine learning

Benchmark and paper code for hallucination in LLM-based clinical concept normalization (ICD-10-CM, LOINC, RxNorm).

Turn one plain-English sentence into a validated, audit-ready clinical algorithm — DAG, OMOP terminology anchoring, a certified bundle, and a SQL cost preflight. Open governance tooling for clinical scenarios.

This is a package with miscellaneous tools, a set of computational tools and a graphical user interface (GUI) for privacy preserving federated survival model meta-analysis using the DataSHIELD platform. The primary function is to enable data and model documentation.

Multi-agentic biomedical literature evidence extraction, curation, and summarization from PubMed/PMC in Open Knowledge Format (OKF) for downstream machine learning, feature selection, and agentic applications.

Node SDK for OMOP/OHDSI vocabularies - query 10M+ medical concepts across SNOMED, ICD-10, RxNorm, LOINC & 90+ terminologies via simple API

A curated list of awesome OHDSI tools, packages, and resources for OMOP CDM

Responsive HTML/CSS/JS template that mimics Sectra PACS Info Panel styling, letting radiology teams embed division-specific quick links (RIS, protocols, teaching files, guidelines, etc.) directly inside PACS.

A Julia-based machine learning framework to identify predictive biomarkers for chronic Hepatitis B progression from sparse clinical data.

Python library to work with HPO (Human Phenotype Ontology) terms and their gene/disease associations

Apple-native clinical workspace prototype with SMART on FHIR import, local patient charting, and on-device RAG for source-backed clinical intelligence.