multilabel classification of EHR notes
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Jul 21, 2020 - Python
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clinical-notes
Here are 32 public repositories matching this topic...
📰 High-performance tool for negation and uncertainty detection in radiology reports
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Jul 16, 2023 - Python
MEDIQA-Chat Shared Tasks @ ACL-ClinicalNLP 2023
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May 15, 2023 - Python
BERT for TCM clinical records classification. JAMIA 2019
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Dec 13, 2019 - Python
Fact Verification for Clinical Notes with LLMs
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Dec 22, 2025 - Python
A Multimodal Transformer: Fusing Clinical Notes With Structured EHR Data for Interpretable In-Hospital Mortality Prediction
transformer ehr clinical-notes mortality interpretability interpretable-ai multimodal mortality-prediction clinical-variables
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Jul 26, 2022 - Python
Implementation of Deep Patient Representation of Clinical Notes at Intensive Care Unit for Multi-Task Prediction
deep-learning convolutional-neural-networks clinical-notes mimic-iii mortality-prediction multi-task-prediction
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Jul 26, 2019 - Python
Rare disease identification from free-text clinical notes with ontologies and weak supervision
ontology weak-supervision clinical-notes mimic-iii ontology-matching umls entity-linking rare-disease ordo discharge-summaries
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May 6, 2023 - Python
Extracting Patients' information from clinical notes and export them to an OMOP CDM database.
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Jul 14, 2021 - Python
GERNERMED is the first open neural NER model for medical entities designed for German data.
nlp natural-language-processing information-extraction spacy named-entity-recognition clinical-notes ner nlp-machine-learning medical-informatics
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Oct 20, 2023 - Python
GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.
nlp natural-language-processing german information-extraction spacy dataset transformer named-entity-recognition gpt clinical-notes ner language-model nlp-machine-learning medical-informatics
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Oct 5, 2023 - Python
A multi agent healthcare assistant system implemented using Python and Langgraph. The agents include icd10 code extractor, SOAP document generator and medical image report generator. This project uses one of the latest LLMs, MedGemma model.
python natural-language-processing transformers pytorch healthcare clinical-notes image-analysis radiology multi-agent-systems medical-application medical-assistant fastapi huggingface llm langchain langsmith langgraph medgemma soap-notes icd10-codes
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Aug 20, 2025 - Python
GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.
nlp natural-language-processing information-extraction spacy named-entity-recognition clinical-notes ner nlp-machine-learning slot-filling medical-informatics
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Oct 20, 2023 - Python
Deep learning for cancer symptoms monitoring on the basis of EHR unstructured clinical notes
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Apr 6, 2022 - Python
Code and Datasets for the paper "TransICD: Transformer Based Code-wise Attention Model for Explainable ICD Coding", accepted by AIME 2021.
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Mar 29, 2021 - Python
Estimate sentiment in clinical notes via keywords or deep learning models
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Sep 30, 2023 - Python
Human-AI Co-design for Clinical Prediction Models
statistics ai ml healthcare openai ehr gpt clinical-notes human-computer-interaction clinical-research clinical-decision-support xai interpretable-machine-learning ehr-data human-ai-interaction llm human-ai-collaboration
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Sep 19, 2026 - Python
A lightweight clinical large language model (LLM) for cognitive decline detection from clinical notes. The project includes synthetic EHR data for rapid validation and experimentation. The paper was published in Journal of Biomedical Informatics: CD-Tron: Leveraging Large Clinical Language Models for Early Detection of Cognitive Decline from EHR
ehr clinical-notes alzheimers-disease interpretability synthetic-data unstructured-data interpretable-ai alzheimer-disease-prediction shap clinical-nlp ehr-data shap-values large-language-models llm cognitive-decline llms medical-llm clinical-llm lightweight-llm
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Jul 6, 2025 - Python
Repository of FHIR and annotation resources used to benchmark NLP Sandbox tools
nlp benchmarking data annotation rest-api db fhir clinical-notes patients clinical-data nlp-sandbox sage-bionetworks
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Oct 8, 2022 - Python
MedNLI Is Not Immune: Natural Language Inference Artifacts in the Clinical Domain (ACL-IJCNLP '21)
clinical-notes mimic-iii natural-language-inference nlp-machine-learning clinical-nlp mednlp adversarial-filtering annotation-artifacts
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Aug 6, 2021 - Python
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