Official Codes for "Publicly Shareable Clinical Large Language Model Built on Synthetic Clinical Notes"
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Aug 22, 2024 - Python
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clinical
Here are 67 public repositories matching this topic...
Characterization of Germline variants
bioinformatics annotations clinical variants characterization pathogenicity clinvar vep diseases pathogenic-variants germline-variants exac acmg gnomad
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Mar 15, 2022 - Python
Clinically Adapted Model Enhanced from LLaMA
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Sep 1, 2023 - Python
A collaborative learning framework for empowering biomedical research
learning security data-science privacy ai analytics clinical healthcare dataset collaborative federated biomedical multicentric
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Jun 12, 2026 - Python
[ACL 2024] This is the code for our paper ”RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records“.
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Sep 19, 2024 - Python
A reported 96,480 people were diagnosed with melanoma in the United States in 2019, leading to 7230 reported deaths. Early-stage identification of suspicious pigmented lesions (SPLs) in primary care settings can lead to im- proved melanoma prognosis and a possible 20-fold reduction in treatment cost. Despite this clinical and economic value, eff…
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Sep 19, 2024 - Python
Integrating AI to Clinical Workflow
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Jun 22, 2022 - Python
Official source for Spanish pretrained biomedical and clinical language models and resources made @ BSC-TEMU within the "Plan de las Tecnologías del Lenguaje" (Plan-TL).
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Nov 16, 2022 - Python
This is a broad purpose web application for various kinds of clinical use cases. It has a Flask server, a React front end, SurrealDB for a multimodel database, LLM integration, MCP, RAG, OSCAR EMR integration, and much, much more.
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May 22, 2026 - Python
This project develops compact transformer models tailored for clinical text analysis, balancing efficiency and performance for healthcare NLP tasks.
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Mar 26, 2024 - Python
Metagenomics/viromics pipeline that focuses on automation, user-friendliness and a clear audit trail. Jovian aims to empower classical biologists and wet-lab personnel to do metagenomics/viromics analyses themselves, without bioinformatics expertise.
surveillance ngs clinical metagenomics public-health diagnostics viruses erasmus virology rivm viromics virus-typing
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Sep 1, 2023 - Python
Disambiguating biomedical and clinical concepts with word embeddings
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Apr 17, 2018 - Python
PyTorch library for MIMIC III Benchmark experiments
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Nov 14, 2023 - Python
Automatic generation of descriptive radiological reports from X-RAY scans
computer-vision deep-learning clinical transformer xray tokenization captioning-images text-embedding radiology-reports
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Jun 12, 2026 - Python
Sobolev alignment of deep probabilistic models for comparing single cell profiles
python deep-learning clinical gene-expression cancer-genomics scrna-seq single-cell variational-autoencoder cell-lines scanpy pre-clinical kernel-machine-learning drug-response scvi-tools
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Jun 8, 2026 - Python
Run model evaluation and upload results on Clinical NER (NCER) leaderboard
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Oct 10, 2024 - Python
An open-source toolkit extracting physiological and behavioral metrics from facial videos to assess fatigue, drowsiness, and cognitive load.
python cython clinical healthcare eye-tracking mental-health physiology burkina-faso fatigue-detection xcept-health
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Apr 18, 2026 - Python
MIMIC-III corpus parsing and section prediction with MedSecId (COLING paper)
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Jul 27, 2025 - Python
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