A napari plugin for copick

IsoNet at higher resolution

Definitions for a collaborative cryoET annotation tool.

A collaborative cryo-ET annotation tool

MCP-server for the copick CLI.

Locating bacterial flagellar motors in cryo-electron tomography slices using YOLOv8l. Fine-tuned on the BYU Kaggle 2025 dataset with mosaic and geometric augmentations, achieving 87.5% mAP50 and 0.52 mAP50-95 on a single T4 GPU.

This project builds machine learning models to automatically detect and classify protein complexes in cryo-electron tomography (cryoET) images, enabling scalable analysis of cellular structures and supporting advanced biological and medical research.

Automated detection of protein complexes in cryo-electron tomography (cryoET) data. ML models identify five particle classes using a weighted F-β (β=4) metric focused on recall, especially for hard targets, helping reveal cellular “dark matter” and advance biological discovery.

A curated list of awesome computational cryo-ET methods.

Removing etomo skipped views from Warp xml files to improve the tomogram reconstruction.

Scaling data analyses in cellular cryoET using comprehensive segmentation.

TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.

A Modular Platform for Streamlining Automated Cryo-FIB Workflows

Self-supervised learning for isotropic cryoET reconstruction

Subtomogram Averaging using Dynamo, imod, Relion and MatLab

Docker environment for CryoET data analysis

.MRC and .EM thumbnailer for GNOME

A Docker-based distribution of Appion-Protomo.