Learning to untangle genome assembly with graph neural networks.
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Nov 17, 2024 - Python
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denovo-assembly
Here are 10 public repositories matching this topic...
Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
machine-learning pipeline tensorflow pytorch mass-spectrometry peptide-identification denovo-assembly
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Feb 23, 2024 - Python
Iterative Organellar Genome Assembly
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Jun 9, 2020 - Python
String Graph Construction on Spark
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May 15, 2018 - Python
[A.A. 23/24] R. Napoli
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Jul 30, 2024 - Python
🛠️🧬De Bruijn graph-based genome assembler📈📊
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Oct 10, 2024 - Python
This project plots the effect of selecting different kmer length parameter in 2 different de novo genome assembly tools - AbySS and Velvet.
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Aug 3, 2024 - Python
Python based implementation of De-Novo transcriptome assembly
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Dec 23, 2018 - Python
Pan-genomics of C difficile with linked reads
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Jul 29, 2025 - Python
Long-Read Viral Metagenome Assembly Benchmark (LoViMAB) is a pipeline made to compare metagenomic assemblies of viral nanopore reads.
benchmarking nanopore metagenomics denovo-assembly viral-metagenomics snakemake-workflow long-read-sequencing
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Dec 17, 2025 - Python
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