A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.
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Updated
Jan 2, 2019 - Python
A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.
Matlab and Python code to compute perturbed topological signatures (PTS), an efficient topological representation that lies on the Grassmann manifold.
Calculates the eigendecomposition of the Laplace-Beltrami operator on charts of Riemannian manifolds. Moved to https://git.sr.ht/~jmbr/laplace-beltrami-eigensolver
Simple visualization of oblique cone intersection with unit sphere
A toolkit to manipulate n-dimensional geometric curves in Python ➰
This repository contains the python implementation of the paper titled "Discrete Differential-Geometry Operators for Triangulated 2-Manifolds" by Meyer et. al. VisMath 2002 http://multires.caltech.edu/pubs/diffGeoOps.pdf
Code-repository for the ICML 2020 paper Fairwashing explanations with off-manifold detergent
Pose refinement with differentiable rendering
Building geometric objects using blending techniques and global deformations
A Python package for information-geometric and information-topological analysis of mathematical models
A 2-dimensional surface grapher. Graphs 2-dimensional surfaces embedded in 3-dimensional space, including visualizations of Gaussian and mean curvature
General Relativity Utilities in Python
Graph dynamical systems library
Python implementation of the paper "Discrete Differential-Geometry Operators for Triangulated 2-Manifolds" by Meyer et. al. VisMath 2002
Vibration excitation in gearboxes due to surface deviations.
Drafts of textbooks. One on the math inspired by supersymmetric field theories. One on low dimensional (below 3+1) integrable physics.
Integrators on homogeneous spaces
Useful toolkit for DIfferential Geometry with Python
I built this web app with the Dash open source framework to showcase my publications and web projects.
Riemannian geometry in JAX
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