Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

Python implementation of the paper "Discrete Differential-Geometry Operators for Triangulated 2-Manifolds" by Meyer et. al. VisMath 2002

Matlab and Python code to compute perturbed topological signatures (PTS), an efficient topological representation that lies on the Grassmann manifold.

ArchGeo library code for the paper "Discrete Orthogonal Structures"

Code-repository for the ICML 2020 paper Fairwashing explanations with off-manifold detergent

This repository contains the python implementation of the paper titled "Discrete Differential-Geometry Operators for Triangulated 2-Manifolds" by Meyer et. al. VisMath 2002 http://multires.caltech.edu/pubs/diffGeoOps.pdf

Riemannian geometry in JAX

A package for protein conformational ensemble analyses based on a differential geometry representation of protein backbones.

General Relativity Utilities in Python

A Python package for information-geometric and information-topological analysis of mathematical models

A package to simulate the output of a control system by means of the Chen-Fliess series.

Calculates the eigendecomposition of the Laplace-Beltrami operator on charts of Riemannian manifolds. Moved to https://git.sr.ht/~jmbr/laplace-beltrami-eigensolver

Graph dynamical systems library

Pose refinement with differentiable rendering

Spacetime curvature analysis and diagnostic tools for metric calculations. Studies Riemann tensor components, scalar curvature, and geometric invariants in numerical relativity applications.

Drafts of textbooks. One on the math inspired by supersymmetric field theories. One on low dimensional (below 3+1) integrable physics.

Simple visualization of oblique cone intersection with unit sphere

Vibration excitation in gearboxes due to surface deviations.

Building geometric objects using blending techniques and global deformations

A collection of code for simulating extrinsic flows.