Simulation and animation of simple passive dynamic walking models in Matlab

Dynamical analysis of minimnal networks based on approximate majority algorithm (AM)

JED is a program for performing Essential Dynamics of protein trajectories written in Java. JED is a powerful tool for examining the dynamics of proteins from trajectories derived from MD or Geometric simulations. Currently, there are two types of PCA: distance-pair and Cartesian, and three models: COV, CORR, and PCORR.

Employing Human Social-Motor Solutions for Human-Machine Interaction in Dynamical Task Contexts

Sample code for the NIPS paper "Scalable Variational Inference for Dynamical Systems"

Code associated with the Karr Lab's 2018 whole-cell modeling review in Current Opinion in Biotechnology

A library of hybrid N-body + test particle simulations for dynamical modeling of galaxy interactions.

Whole-cell modeling tutorials

Dynamics of Newton's Method for a Nonanalytical Perturbation on a Complex Quadratic Function

Computational model for the report: Work scenarios in the ecosocial transition - 2020-2030.

Kinetic modeling of glucose and acetate metabolisms in E. coli

numerical solver for first order ODE systems via Euler and RK4 schemes

control theory repo

BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Detailed paper describing python program to calculate fixed points of various functions and calculate the order of the orbits for a given seed.

Using Python with matplotlib to calculate and visualize/analyze randomly seeded orbits of 3 different functions.

Dynamical System created from mapping of curvature and torsion of image of parametric planar curve when stereographically projected to the unit sphere.

PyPi package of Reward-Modulated Self Organizing Recurrent Neural Network

Nengo library of additional extensions