A pipeline to go from raw sequencing data to high quality bins and pretty plots.

A multi-way annotator for genetic elements and genetic variations

A repository for the development of patterns and terms for axiomatisation and refactoring of the GO MF branch

Python3 extension for DAVID Bioinformatics Tool

Package for improving the functional annotation of bacterial genomes, classification of protein-coding sequences into clusters of orthologous groups, and visualization of the final annotated genome.

Snakemake pipeline to benchmark 11 functional pathway annotation systems

Multi-dimensional Annotation Class Integrative Estimation

Knowles Lab Research: determine which genetic variants cause a phenotype with non-binary functional annotations

ncRNA identification, annotation and functional prediction

A computational tools for improving the functional annotation of bacterial genomes and the classification of CDSs into cllusters of orthologous groups (COGs). It allows summarizing annotations from different resources to provide a more accurate annotation of genes regarding their assignment into COGs and their categories.

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

Exploratory Framework for Genotype-Phenotype Prediction

Fast genome-wide functional annotation through orthology assignment

UniProt Id Mapping through API

This is the digital version of my master project's logbook that is created by using Streamlit Python package to document all the command lines and codes that I ran to do my project so that other researchers can later reproduce the exact same analysis results

ATLAS - Three commands to start analyzing your metagenome data

GWAS locus visualization and functional annotation workflows for variant interpretation.

This repository hosts the tracker for issues pertaining to GO annotations.