Official git repository for Biopython (originally converted from CVS)
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
User friendly and accurate binder design pipeline
Protein Graph Library
Official release of the ProGen models
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
Diffusion models of protein structure; trigonometry and attention are all you need!
A collection of awesome things regarding all omics.
Official repository for the ProteinGym benchmarks
A dependency-free cross-platform swiss army knife for PDB files.
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Scientific Large Language Models: A Survey on Biological & Chemical Domains
Terminal protein structure viewer — interactive 3D visualization of PDB/mmCIF structures with cartoon ribbons, braille rendering, and Sixel/Kitty graphics
A collection of research papers for AI-based protein design
Evolutionary couplings from protein and RNA sequence alignments
[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models
Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, as well as visualizing, converting file formats and analyzing the results.
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